Oryza sativa japonica (Japanese rice): 4333540
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Entry
4333540 CDS
T01015
Symbol
MSI1
Name
(RefSeq) histone-binding protein MSI1 homolog
KO
K10752
histone-binding protein RBBP4
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03082
ATP-dependent chromatin remodeling
osa03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
4333540 (MSI1)
03083 Polycomb repressive complex
4333540 (MSI1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
osa03036
]
4333540 (MSI1)
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
4333540 (MSI1)
Histone modification proteins
HAT complexes
HATB complex
4333540 (MSI1)
HDAC complexes
Sin3A-HDAC complex
4333540 (MSI1)
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
4333540 (MSI1)
PRC2.2
4333540 (MSI1)
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
4333540 (MSI1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
4333540 (MSI1)
Chromatin remodeling factors
NuRD complex
4333540 (MSI1)
NuRF complex
4333540 (MSI1)
NuRF complex (fruit fly)
4333540 (MSI1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WDR55
EIF3I
WD40_RFWD3
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
WD_LRWD1
eIF2A
Beta-prop_RIG_1st
MIOS_WD40
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
4333540
NCBI-ProteinID:
NP_001405311
LinkDB
All DBs
Position
3:complement(join(25485209..25485437,25486006..25486101,25486423..25486547,25487394..25487546,25488621..25488947,25492597..25492953))
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AA seq
428 aa
AA seq
DB search
MPKATAAEEEEFRAEVEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDRAEP
AGKDHSVQKMVLGTHTSDNEPNYLMLAQVQLPLDDAEADARHYDDDHAEIGGFGAASGKV
QIVQQINHDGEVNRARYMPQNSFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLKG
HNSEGYGLSWSIFKEGHLLSGSDDAQICLWDIKANSKNKTLDALQIFKYHDGVVEDVAWH
LRHEYLFGSVGDDHNLLIWDLRSPVSTKPVQSVAAHQGEVNCLAFNPFNEWVVATGSTDK
TVKLFDLRKIDTSLHTFDCHKEEVFQVGWSPKNETILASCCLGRRLMVWDLSRIDQEQTP
EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEDDVP
TDDPAKAP
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaggctacggcggcggaggaggaggagttccgggcggaggtggaggagcggctg
atcaacgaggagtacaagatctggaagaagaacaccccgttcctgtacgacctcgtcatc
acccatgccctggagtggccgtccctcaccgtgcagtggctccccgaccgcgctgagccc
gctgggaaggaccactccgtccagaagatggtgctcggcacccacacctccgacaacgag
cccaactacctcatgctcgcccaggtccagctccccctcgacgacgccgaggccgacgcg
cgccactacgacgacgaccacgccgagatcgggggcttcggcgccgcctccggcaaggtg
caaatagttcaacagataaatcatgatggagaggttaatcgagctcggtatatgccccag
aattcatttataattgctaccaagacagtcagtgcagaagtatatgtctttgattatagc
aagcacccatcaaagcctccattggatggtgcatgcaatcctgacttacggctgaaggga
cataactctgaaggatatggactgtcttggagtatatttaaggagggccatttgttgagt
ggatctgatgatgctcaaatttgcttatgggacatcaaagcaaatagtaaaaacaaaacc
cttgacgctcttcagatttttaagtatcatgatggtgtcgttgaagatgttgcctggcat
ttgaggcatgaatacttgtttggctcagttggtgatgatcacaatttgctaatttgggat
ttacgttctcctgtgtctactaagcctgtacagtctgtggcggcacaccagggtgaggtg
aattgtctggctttcaaccccttcaatgaatgggttgttgcaactggttcaactgacaag
accgtgaaactatttgatcttcggaagattgatacttccctacacacctttgattgccac
aaggaggaagtatttcaagttggatggagcccaaagaatgagactatacttgcatcttgt
tgtcttggcagaaggttaatggtctgggatttaagcaggattgaccaggaacagacaccg
gaggatgcggaagatggtcctccggagctcctgttcattcatggaggccatacaagcaag
atctccgacttctcctggaacccgtgcgaggactgggtgattgctagcgtcgctgaggac
aacatccttcagatatggcaaatggcagagaacatctaccatgacgaggatgatgtgccg
actgatgacccggccaaggctccctga
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