Oryza sativa japonica (Japanese rice) (RefSeq): 4333571
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Entry
4333571 CDS
T01015
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03020
RNA polymerase
osa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
4333571
09124 Replication and repair
03420 Nucleotide excision repair
4333571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4333571
03400 DNA repair and recombination proteins [BR:
osa03400
]
4333571
Enzymes [BR:
osa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
4333571
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
4333571
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
4333571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
4333571
NCBI-ProteinID:
XP_015631661
UniProt:
Q10G20
LinkDB
All DBs
Position
3:25033517..25042084
Genome browser
AA seq
1222 aa
AA seq
DB search
MEDDEYEEGMEMEMGGHHHPHHGGGYGAEEYGAVGGEEMEDEEADGDAPDEEEITQEDAW
AVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETLHK
ISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTET
MEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMS
TNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPY
IRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIG
KRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAE
DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITS
GLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN
SHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQ
AAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRP
LFIVENQRLLIKKRHIRALQQRETPEEGWHDLVAKGFIEYIDTEEEETTMISMTINDLIG
ARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY
QLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS
IDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRV
SGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVR
MRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLI
ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFL
GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFL
KERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM
AMAIAPRMLTQDNKTGKDQKKR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacgagtacgaggaggggatggagatggagatgggcgggcaccaccacccg
caccacggcggcgggtacggcgccgaagagtacggggccgtcggcggggaggagatggag
gacgaggaggcggatggggacgcccccgacgaggaggagatcacccaggaggacgcctgg
gccgtcatctccgcctacttcgaggagaagggcctcgtgcgccagcagctcgactccttc
gacgagttcatccagaacaccatgcaggagatcgtcgacgagtccgccgacatcgagatc
cgccccgagtcgcagcacaaccccggccgccaggccgagttcgccgagacactccacaag
atcagctttggacaaatctatctgagtaaaccaatgatgacagaagctgatggagagaca
gctactttatttccaaaatcggcaaggctccgaaacctaacatactcggcgccactatat
gttgatgtatcatacagagttatgaaaaaaggacatgactgtgaagaggttacagaaact
atggagtacccaaaagtctttattggaaaggttcctatcatgttgcgttctagttattgc
acactgtttcaacagtccgaaaaggatcttacagaacttggagagtgcccttatgaccaa
ggagggtattttataatcaatggtagtgaaaaagtccttattgcccaggagaagatgagc
accaaccatgtctatgtgtttaagaagaggcagcctaataaatacgcatacgtggctgaa
gtccgttctatggcagagaaccagaatagacctgctagtagtatgtttgtgcggatgctt
tctagggcaggcgcgaaagggggttcatctggtcaatatatacgtgctactttgccttat
atccgtgcagacattccgatcatcattgtgttccgagcattaggatttgttgctgataaa
gatatattagagcacatatgctatgatttctctgatacacaaatgatggaattgctacgc
ccatctttagaggaagctttcgtcattcagaatcagcaggttgctctggattacattgga
aagcgtggagctactgttggtgtaactaaagaaaagagaattaagtatgccaaagagata
cttcaaaaagaaatgttaccccatgttggtgtgggtgaattctgtgaaaccaaaaaggcg
tactactttgggtacattattcatcgtctgctgatgtgcgctcttggtcgaagagctgaa
gatgacagagatcattatggcaacaaaagactggatcttgcaggtccattgcttggagga
ctgtttagaatgcttttcagaaagttgacaagggatgtgaggtcatatgtgcaaaagtgt
gtggataatggaaaggaagtcaatctgcaatttgctattaaagccaaaaccattactagt
gggttgaagtattcccttgctactggaaactggggacaggctaaccaagctggtaccagg
gctggtgtttctcaggtgcttaatcgccttacctatgcatctacattatctcatctgcgg
aggcttaactctccaattgggcgtgaagggaaattggcaaaacctcggcaattgcataat
tctcattggggaatgatgtgccctgctgaaacacctgagggacaagcttgtggtttggtt
aaaaatcttgcattgatggtgtatatcactgttggttctgctgcaaatcctattttggaa
tttttggaggagtggggcacagaaaattttgaggagatatcaccagccgtcattccacaa
gctgctaaaatttttgtcaacggttgttgggttggaattcacaggaaccctgacctgttg
gtgaagactcttaggcgtttgagaagacagattgatgtcaacactgaagttggtgtggtt
cgtgatattcgtcttaaagaactcagactttatacagactatgggcgttgcagtcgtcca
ctgtttattgttgaaaaccaaaggcttcttattaaaaagagacatatccgagcgttgcag
caaagggagacacctgaggaaggttggcatgacttagttgcgaaaggatttattgagtac
atagatactgaagaggaagaaactactatgatctccatgaccattaatgaccttattggt
gcaagacacaatccagaggaggcgtactctgaaacttacacacattgtgagattcatcct
tcattgatacttggtgtctgtgcctcgattattccttttccagatcataaccagtcacct
cgtaatacatatcagtctgctatgggaaaacaagcaatgggaatctatgttaccaactat
cagttaagaatggacacattggcctatgtgctatactacccacaaaagcctcttgttact
actcgtgctatggaacatttgcacttcagacagttaccagctggcattaatgcaattgtt
gctattgcatgctactctggatataatcaagaagattcggttattatgaaccaatcttca
atagatcgtggattcttccgatctctgtttttccgctcatacagagatgaggaaaagaag
atggggactcttgtcaaagaggagtttggccgtccaaatagggagaatactatgggaatg
cgtcatgggtcatatgataaactagatgatgatggacttgcaccaccaggtacaagggta
tctggtgaagatgtcattattgggaagacatctcctattccacaagatgatgcccaaggg
caagctactagatacacaaagcgtgatcacagtacttcgctgcgccacagtgaaagtggg
atggtggatcaggttctcctaacaacaaatgctgatggtttaagatttgttaaggttaga
atgcgatcagttcgtataccacagattggggataagtttagtagtaggcatggtcagaaa
ggaactgtgggaatgacttatacacaagaggacatgccatggactattgaaggcatcaca
cctgatattattgtgaatccacatgctattccatcccgtatgactattggtcaactgatt
gagtgtattatgggtaaagttgctgctcacatgggaaaagaaggagatgcaactcctttc
actgatgttactgtggataacatcagcaaagcacttcataaatgtggttatcagatgcgt
ggattcgagaccatgtacaacggtcacactggaagaaaattaactgccatgattttcctt
ggtcctacttattaccagagacttaagcacatggtggatgacaagattcactctagaggc
cgtggtcctgtgcagatacttaccagacaacctgcagaggggcgctcacgcgatggtggt
ctccggtttggagagatggagagggactgtatgattgctcatggcgctgcatttttcctt
aaggaaaggttatttgaccagagtgatgcgtacagagtccatgtatgcgagaagtgtggg
cttattgctattgctaatctcaagaagaattcctttgagtgcagagggtgcaagaacaaa
accgacattgtccaagtgcatataccctacgcgtgtaagcttctgttccaggagcttatg
gcgatggccatcgctcccaggatgctcactcaggataacaaaactgggaaggatcagaag
aaacgttga
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