Oryza sativa japonica (Japanese rice) (RefSeq): 4333598
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Entry
4333598 CDS
T01015
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4333598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4333598
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
4333598
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
4333598
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5
DUF5965
Peptidase_M9_N
DUF5646
Motif
Other DBs
NCBI-GeneID:
4333598
NCBI-ProteinID:
XP_015632313
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Position
3:25334283..25345012
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AA seq
863 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPKEKAKAETRDWLNNVVSDLENQIDNFEAEVEGLSIKKGKQRPPRLVHLEKSITRHKA
HIKKLESILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVEELYSTLPMEKVEA
LEDMVSLAPSSLVKGVASVSTTAVLSTKSSVATSPTQATVSAAPSLSVSQDQAEETASQE
SNPESAPQTPPSKVGSQPSVPVVPTTISTSTAAVSVSAETISSPVRPIVPTTTAAVLPAS
VTARSAPENIPAVTSAPANSSSTLKDDDNMSFPSRRSSPAVTEIGLGRGITRGLTSQGLG
SAPISIGPVSGNGSVSALTDLSKRNMLNTDERINSGGISQQLISPLGNKAQPQQVLRTTD
TISSDSSNTNESTVLGGRIFSPPVVSGVQWRPQNTAGLQNQSEAGQFCGRPEISADQREK
YLQRLQQVQQQGSLLNVSHITGISQKQFPSQQPNPLLQQFNSQSSSISSQAGIGLGQVQV
PESGHTKSEEQQQSFAEDVSVESVATAGANKHMSEDDTKIPFSNPSASITEGTQLSRDPD
LPAGQPLQPGMSSSGVGVIGRRSVSDLGAIGDNLSVASASTSHDLLYNLQMLEAAFHRLP
QPKDSERVKNYIPKHPAVTPASFPQIQAPVVSNPAFWERMGGDSLSTDLLFFAFYYQQNT
YQQFLSARELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSYVYFDFHVIDDGTGSGWC
QRIKNDFTFEYNFLEDELSVQTN
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccagccggaagctgcagggcgagatcgaccgcgtcctcaagaaggtccaggag
ggcgtcgacgtcttcgacagcatctggaacaaggtctacgacaccgagaatgcgaaccag
aaggagaagttcgaggccgacctcaagaaggagatcaagaagctgcagcggtacagggac
cagatcaagacgtggatccagtccagcgagatcaaggacaagaaggttagtgcctcttat
gagcaggctcttatggatgcccgaaagcagattgaacgcgagatggaacgatttaaggtt
tgtgagaaggaaactaaaacgaaggccttttccaaggaagggttaggtcaacaaccgaaa
actgatccaaaagagaaggcaaaagctgaaacaagagattggcttaacaatgtggttagt
gatttggaaaaccaaatcgataacttcgaagctgaggttgaaggactttcaattaagaaa
ggaaagcaaagacctcctcgattggtacatttagagaaatctatcacacggcataaagct
cacataaagaaattggagtcaatattaagacttttggataatgatgagttgagtcctgag
caagttaatgatgtgaaagatttcctggatgactatgttgaacgtaaccaggaagatttt
gatgaatttagtgatgtggaagagctctatagcacattacctatggagaaggttgaagca
ctagaagacatggtttcacttgccccttccagtcttgtcaagggtgttgcttctgtttct
actactgcagttttgagtacgaagagttctgtagcaacttcacctactcaggctactgta
tcagcagctccttcgctaagtgtatcacaagatcaagcagaggaaacggcttcacaagaa
agcaatcctgaatcggcaccacagacaccaccttcaaaagttggaagtcaaccttcagtg
ccagtcgtgccgactaccatcagtactagtaccgctgctgtctctgtttcagctgaaacc
attagttcccctgtacgcccaattgttcctaccacaacagctgcagtacttcctgcttct
gtcactgctcgaagtgctccagagaacataccagctgttacttcagctcctgcgaactca
tctagtaccttgaaggatgatgacaacatgagctttccttcacgtagatcatcacctgca
gtcaccgaaattggccttggcaggggtattactcgtggattaactagtcagggattaggt
tcagctccaataagtataggtccagtatcagggaatggatcagttagtgcacttactgac
ttgtccaaaagaaacatgttgaatactgatgagaggattaacagtggtggtatttctcag
cagttgatttcaccacttggtaataaagctcaacctcagcaggttctgaggactactgat
acaattagctctgattctagtaacacaaatgagagtactgttcttggaggaagaatcttt
tctcccccagttgtttctggggttcaatggaggcctcaaaacactgctggtttgcaaaat
caaagtgaagcgggccaattttgtggaagacctgaaatttctgcagatcaaagggagaag
tacctgcaaagattgcagcaagtacaacaacaaggcagccttcttaatgtttctcatata
acgggcataagtcagaagcaatttccatcacaacaaccaaacccgctcttacaacagttt
aactctcagagttcctctatttcctcccaagcgggtattgggcttgggcaggtacaagta
ccagaatctgggcatacaaaaagtgaggaacaacaacaaagttttgcagaagatgttagt
gtggaatccgttgcaacagctggagcaaacaaacacatgagtgaagatgatacaaagatt
ccattttcgaatccgtcagcatccataacagaaggtactcaactatctagagaccctgat
ctaccagctgggcagcctttgcaacctggcatgtcatcatctggtgttggtgttatcggc
cggaggagtgtatctgatcttggtgcaattggtgataacctcagtgtagcttctgcaagt
actagtcatgatctgctttataatctgcaaatgcttgaagctgctttccataggcttcca
caaccaaaggactcggagcgagtcaaaaattatattccgaagcaccctgcagtcacccct
gccagcttcccgcaaattcaggcacctgtagtatcaaatcctgccttttgggaaagaatg
ggtggcgattcattatctacggatttgttgttctttgctttctactatcagcaaaacaca
taccagcaatttttaagtgccagagaactaaagaagcaatcgtggagatttcacagaaag
tacaatacttggttccaacggcacgtggagccacaagttacaactgatgagtatgagcgg
ggatcttatgtgtactttgatttccatgtcatagatgacggcacaggatcaggatggtgt
cagagaatcaagaacgacttcacatttgagtacaacttccttgaggatgagctgtcagta
cagacaaattag
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