Oryza sativa japonica (Japanese rice) (RefSeq): 4333826
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Entry
4333826 CDS
T01015
Name
(RefSeq) pre-mRNA-splicing factor 18 isoform X1
KO
K12817
pre-mRNA-splicing factor 18
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4333826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4333826
Spliceosome [BR:
osa03041
]
Complex C
Other components
Step II factors
4333826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Prp18
PRP4
Motif
Other DBs
NCBI-GeneID:
4333826
NCBI-ProteinID:
XP_015628827
UniProt:
Q53RB6
Q10EE8
LinkDB
All DBs
Position
3:complement(28138879..28141960)
Genome browser
AA seq
501 aa
AA seq
DB search
MERVFSTRQIRRKHCLYGLCFALKFALSRPKVKLGQSPTGLLFTQSELRKSRFEKVRARN
LSCSMLPEPIDLPKTNAQKLSIHPPIRHAEPPIRLSKIQSKANPLCECATATHPHSGEPM
DVLKRELQRKRQLLDADFGGRKLLRRAEIERREMERIREAERRLLLQKQLRSSSSHHRAA
SRSTTTPGAPDGDESSRTEHRGDGEEKEGAPLLPREEVIRRLRVLRQPATLFGEDDAARL
RRLHAVLEDPAALADVEAAEIGEGQTNDFLRDIQALRAKAVAASASAAAKPKAGAATAES
GGETREEVPFEELCDEDKIMTFFKRLMSEWSQEMDEMPEAERRTAKGKAAVATCKQCARY
LEPLFKLCKKKTLPEDVRGSLLEVVRCCMRRDYLAAVDNYIKLAIGNSPWPIGVTMVGIH
ERSAREKIYANSVAHIMNDETTRKYLQSVKRLMTFCQRKYPTDPSRSVEFNSLANGSDLQ
SLLAEQNSKNSEETLRLVAAS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggagagagtattttccacacggcaaatacggagaaaacactgtttgtatgggctttgc
tttgcgcttaagtttgcacttagcaggcctaaagttaaactgggccaatcacctaccggt
ttactcttcactcaatccgaactccgaaaatcgagattcgagaaggttcgcgcgagaaac
ctttcgtgctcgatgcttccagaacccatcgatctcccaaaaacgaatgctcaaaaacta
tccatccatcctccgatccgccatgcggaacctccgattcgcctctccaaaatccaaagc
aaagctaacccactctgcgagtgcgccaccgcgacccacccccactccggcgagccaatg
gacgtcctgaagcgcgagctacagcggaagcgccagctgctcgacgccgacttcggcggc
cgcaagctcctccgccgcgccgagatcgagcgccgcgagatggagcggatccgggaggcc
gagcgccggctcctcctccagaagcagctccggtcctcctcctcccaccaccgcgccgcg
tcgcgctccacgaccacgccgggggctcccgacggcgacgagtcgtcgcggaccgagcac
cgcggcgacggggaggagaaggagggcgcgccgctcctccccagggaggaggtcatccgg
cgcctgcgcgtgctgcgccagccggccacgctcttcggcgaggacgacgccgcgcgcctc
cgccgcctccacgccgtgctcgaggaccccgcggcgctcgccgacgtcgaagcggcggag
atcggggagggccagaccaacgacttcctccgcgacatccaggcgctgcgggcgaaggcc
gttgcggcgtcggcgtcggcggcggcgaagcccaaggctggcgctgcaactgcagagagc
gggggcgagacgagggaggaggtgccgttcgaggagctctgcgacgaggacaagatcatg
accttcttcaagaggctgatgagcgagtggagccaggagatggacgagatgcccgaggcg
gagaggcggacggcgaaagggaaggctgcggtggccacctgcaagcagtgcgcgcgctat
ctcgagccgctgttcaagctgtgcaagaagaagaccctgcccgaagatgtccgtggatca
ttgctggaggtggtgaggtgctgcatgagacgggactacttggcggcggtggacaactac
atcaagctcgccatcggcaactcgccgtggccgatcggcgtcacgatggtgggcatccac
gagcgctcggcgcgcgagaagatctacgccaacagcgtggcgcacatcatgaacgacgag
acgaccaggaagtacctgcagtccgtgaagaggctgatgaccttctgccagaggaagtac
ccgacggacccgtccaggtcggtggagttcaacagcctggccaacggcagcgacctgcag
tccctcctggcggagcagaactccaagaactcggaggagacgcttcggctggtggccgcg
tcgtga
Oryza sativa japonica (Japanese rice) (RefSeq): 4343671
Help
Entry
4343671 CDS
T01015
Name
(RefSeq) pre-mRNA-splicing factor 18
KO
K12817
pre-mRNA-splicing factor 18
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4343671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4343671
Spliceosome [BR:
osa03041
]
Complex C
Other components
Step II factors
4343671
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Prp18
PRP4
Motif
Other DBs
NCBI-GeneID:
4343671
NCBI-ProteinID:
XP_015647118
UniProt:
A0A0N7KNQ1
Q6YTU8
LinkDB
All DBs
Position
7:complement(23087858..23090916)
Genome browser
AA seq
438 aa
AA seq
DB search
MDLLKRELEKKRKAATADFGGKSFVRRSELEQKQLQKRRHEEHRQLLSKAPPATSSASAA
GSDPSNPNADPAQSSAANPNPNSSSSAAAASVPPGLAGKKTAQDEALLSEERRIDELDLP
RHEVVRRLRILREPVTLFGEDDADRLARLKFVLKSGVIDDIDDLDMTEGQTNDFLRDMVE
LRKRQRAGRDTYVKGKGKRAGGGDGGEGGAGGDNADDGDGDGRRSGDDADADKDSKRMKT
KFEELCDEDKILVFFKKLLIEWNQELDEMPELEKRTAKGKSMVATFKQCARYLSPLFEFC
RKQVLPDDIRQALLVIVECCMKRDYLAAMDQYIKLAIGNAPWPIGVTMVGIHERSAREKI
YTNSVAHIMNDETTRKYLQSIKRLMTLCQRRYPALPSKSVEFNSLANGSDLQALLSEEKD
PGNPPSEDRLRLMPASKE
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggatcttctgaagagggagctggagaagaagcggaaggcggcgacggccgacttcggc
gggaagagcttcgtgcggcggtcggagctggagcagaagcagctccagaagcggcgccac
gaggagcaccgccagctcctctccaaggccccgccggcgacctcctccgcctccgccgcg
ggctccgaccccagcaaccccaacgccgacccggcccagtcctccgccgcaaaccctaac
cctaactcctcctcgtccgccgccgccgcgtccgtcccgccgggcctcgcggggaagaag
accgcgcaggatgaggcgctcctctccgaggagcgccggatcgacgagctcgacctcccg
cggcatgaggtggtgcggcgcctccgcatcctgcgcgagcccgtcacgctgttcggggag
gacgacgccgaccggctcgcccgcctcaagttcgtgctcaagtccggcgtgattgacgac
atcgacgaccttgacatgacagaggggcagacgaacgacttcctccgtgacatggtcgag
ctccgcaagcggcagagggctggccgggacacctatgtcaagggcaagggcaaacgagcg
ggcggcggtgatggcggcgagggtggcgctggcggggataatgctgatgatggggatggg
gacggccggaggagtggggatgatgctgatgcggacaaggactcgaaacggatgaagacc
aagtttgaggagctgtgtgatgaggacaagatcttggtgttcttcaagaagctactcatt
gagtggaaccaggagcttgatgagatgccggagctggagaagaggacagcaaagggcaag
tcgatggtcgcaaccttcaagcaatgtgcgcggtatctcagccccctgtttgagttttgc
aggaagcaggttcttcctgatgacatccgtcaagcattgctcgttattgttgaatgctgc
atgaagcgtgattatttagcagcaatggaccaatacatcaagctggccattggcaatgca
ccatggcctattggtgtcactatggttggtatccacgagcgttcggcccgagaaaagatc
tacacaaacagtgtggcgcacattatgaacgatgagaccactcgcaagtaccttcagtca
atcaagaggcttatgaccctttgccagcgacgttatcctgctctgccctcaaaatcggtg
gagttcaacagcctggcaaatgggagtgacctgcaggcccttttgtcagaggagaaagat
ccaggaaaccctcctagcgaggataggcttcgactcatgccagcgtcaaaagagtga
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integrated database retrieval system
