Oryza sativa japonica (Japanese rice): 4333834
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Entry
4333834 CDS
T01015
Name
(RefSeq) uncharacterized protein
KO
K13114
pinin
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03013
Nucleocytoplasmic transport
osa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
4333834
03015 mRNA surveillance pathway
4333834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4333834
03041 Spliceosome [BR:
osa03041
]
4333834
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
4333834
Spliceosome [BR:
osa03041
]
Complex C
Other components
EJC/TREX
4333834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
4333834
NCBI-ProteinID:
XP_015631021
UniProt:
Q10EC7
Q75I82
LinkDB
All DBs
Position
3:complement(join(29060210..29060584,29061358..29061442,29061753..29061853,29061961..29062044,29062685..29062756,29063020..29063136,29063203..29063343,29063447..29063506,29063594..29063692,29063768..29063842))
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AA seq
402 aa
AA seq
DB search
MAAATEKTAEEIRRELQELQRQHREISERLRDPRGLRRGAPAAAGPGGPRPLRGFPRPAV
DLVDQSAPKRRILSAVVKVEDTEAKEDVKKEAEAEGPEGGSAAAEGGERRDGGFRRDGSQ
RMPRREFDMSLPEPLPREFPKDEDQSLVKRNKRMLGKLLVGTLEKFQQEDKKLSNTEAYM
RRSEVQRKADQKAREESERLRQQEREQAIEKRKRDMMLRARVAAKAEEKRLELLYMQWAE
HHKKLSNFLRTTAEPPIYYMPAKPIIDDPAIAEENKEKAFQEWKSERRAELTQFQKQVEE
QYMSNVERQLERMQNARNARRGNGPSNMQEMDKELDTHRAEHGPKTRRVLEGGNDDEDDM
DDMAVEDELMDEVLGINEPISDEQTKPSEEAADGVPVSEEVQ
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcgacggagaagacggccgaggagatccgccgcgagctccaggagctccag
cgccagcaccgcgagatcagcgagcgcctccgagacccccgcggcctccgccgcggcgcg
cccgccgctgcaggacccggcgggccccgcccacttcgcggattccctagaccagctgtg
gatttggtggaccagtctgcgcctaagcggaggattctatctgcagtggttaaagtggag
gatactgaagctaaggaggatgtcaagaaggaagcggaggcagaggggccggagggcggt
tcggctgctgctgaaggcggtgagaggagggatggtgggttcaggagggatgggagccag
cgcatgccgaggagggagtttgatatgtcattgccagaacctctcccgagggaatttccc
aaggatgaggatcaaagccttgtgaagaggaacaagaggatgctggggaagcttcttgtc
ggtacattagagaaatttcagcaagaggacaaaaaactgtccaacacagaggcttatatg
cgcagatcagaggttcagcgaaaggctgatcaaaaggctcgtgaggaaagtgaaaggttg
cggcagcaagagcgagagcaagcaatagagaagcgtaagcgtgatatgatgctgcgtgct
cgagtagctgctaaggcagaagaaaagaggttggagctgttatacatgcagtgggctgag
catcacaaaaagctgtccaatttcttaaggacaactgcggaaccaccaatttactacatg
ccagctaaaccaataattgatgatccggctattgctgaggagaacaaggaaaaggcattt
caagaatggaaatctgaacgcagggctgagctaactcagtttcaaaagcaagtcgaagaa
cagtacatgtctaatgttgagaggcagttggaaaggatgcagaatgcgcggaatgcacgg
aggggtaatggtccttcaaacatgcaagaaatggacaaggagctggacacgcacagggcg
gagcatggtccaaaaactcgacgagttcttgagggtggcaatgacgatgaggatgatatg
gacgatatggccgtggaagatgagctgatggatgaagtccttggcattaacgagccaatc
agcgatgagcaaaccaagccgtctgaagaagctgctgatggtgttccggtgtctgaggaa
gtgcaatag
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