Oryza sativa japonica (Japanese rice): 4333885
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Entry
4333885 CDS
T01015
Name
(RefSeq) coatomer subunit alpha-1
KO
K05236
coatomer subunit alpha
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4333885
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
osa04147
]
4333885
Membrane trafficking [BR:
osa04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
4333885
Exosome [BR:
osa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
4333885
Exosomal proteins of bladder cancer cells
4333885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
TPR_COPA_B
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Fis1_TPR_C
Zn_ribbon_19
Zn_ribbon_3
ENTH
Beta-prop_DCAF12
zf-CHCC
Motif
Other DBs
NCBI-GeneID:
4333885
NCBI-ProteinID:
NP_001405518
LinkDB
All DBs
Position
3:complement(join(29594045..29596998,29597412..29597906,29598592..29598799))
Genome browser
AA seq
1218 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFH
ATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCVAVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
LTQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWILSAHP
EMNLLAAGHDSGMIVFKLERERPAFSVSGDTVFYVKDRFLRFFEFTTQKEVQLAPIRRPG
SVSLNQSPKTLSYSPTENAVLICSDVDGGSYELYIVPKDSAGRADYLQDAKKGAGGSAVF
VARNRFAVLEKSSNQVLVKNLKNEIVKKSPLPIATDAIYYAGTGNLLCKAEDRVTIFDLQ
QRLILGELQAPSVKYVVWSSDMESVALLSKHAVVIANKKLVHRCTLHETIRVKSGAWDEN
GVFIYTTLNHIKYCLPNGDSGIIKTLDVPIYITRVIGNNIFCLDRDGKNKLVTVDASEYI
FKLALLRKRYDHVMSMIKNSQLCGQAVISYLQQKGFPEVALHFVKDEKTRFNLALESGNI
QIAVASAKEIDDKDHWYRLGIEALRQGNVGIVEYAYQRTKNFERLAFLYLITGYMDKVGF
MCKIAGQNNNLMGQFHNALYLGDALKRVEILENAGQLPLAYITATTHGLTEIADRLAAEL
GENIPSLPEGKARSLLIPPAPLTASGDWPLLRVMHGIFEGGLDATGKAELEEDDEAAGAD
WGDEDLDMVDASEAMANGGDGFDAEEGEANEEDGEEGGWDLEDLELPPEAETPKNAGNAR
SAVFVAPPPGMPVSLIWTQKSSLAGEHAAAGNFDTAMRLLSRQLGIKNFAPLKPLFVDLH
MGSHSYLRALATAPIIPIAVEKGWSESASPNVRGPPALVFTFPQMEDRLKAAYKATTDGK
FPEALRQFLSILHTIPLIVVDSRREVDEVKELIEIVREYVLGLRMELKRKELRDDVNRQQ
ELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATAEHFARMLLENNPNEAQARRARQVQ
QQCSGKKDSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICEL
AVVGADASGLLCSPTQSR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccaagttcgagacgaagagcaaccgggtgaaggggctgagcttccacccgcgg
cggccatggatcctggccagcctccacagcggggtgatccagatgtgggactaccgcatg
ggcaccctcctcgaccgcttcgacgagcacgacggccccgtccgcggcgtccacttccac
gccacgcagccgctcttcgtctccggaggtgatgattacaagattaaggtgtggaattac
aagacacaccgctgcctcttcacacttcacgggcaccttgactatattcgcaccgtgcaa
ttccaccacgaatacccatggatagtaagtgctagtgatgaccagacaatccggatctgg
aactggcagtcacgcacatgtgtagctgtgctgactggacataaccactatgtcatgtgc
gcatcattccatcccaaggaggacctggttgtgtcagcatcactggatcagactgtccgt
gtttgggatattggtgctttgaggaagaagacggtgtcacctgcagatgacatcctgcgt
ctcacccagatgaacacagatctgtttggaggtgttgatgcagttgtaaaatatgtgttg
gaagggcatgaccgtggggtgaactgggcatcatttcaccccacattgccactcattgtt
tccggggcagatgaccgacaagtgaagctatggagaatgaatgacacgaaggcttgggaa
gttgatactttgcggggacacatgaataatgtgtcatgcgtgatgttccatgctaagcaa
gacatcattgtgtccaactcagaggacaaaagcattcgcatctgggatgccacaaagcga
accggtattcaaacgttcaggcgggaacatgatcgtttctggattctttctgctcaccct
gagatgaatcttcttgccgctggtcatgacagtggtatgattgtgtttaaattggagagg
gaacgtccagctttctctgtgagtggagatactgttttctatgtgaaggaccgttttctt
cgtttttttgaattcaccacacagaaggaagttcagcttgctccaataagaagacctgga
tcagtgagcttgaaccagtcacccaagacactatcttacagtccaactgaaaatgctgtc
ctgatttgctctgatgtggatggaggctcatacgaactctacattgttcccaaggattct
gctggcagggctgactatttgcaggatgcaaagaagggagctggtgggtcagctgttttc
gtggcacgcaacaggtttgcagtccttgagaagagtagcaatcaagttttggtgaagaat
cttaagaatgaaatcgtaaagaaaagccctcttcctattgccacggatgcaatttattat
gctgggactggtaacttgctgtgcaaagccgaagaccgagtgaccatctttgatctgcag
caaaggttaattcttggtgagctccaggcaccttctgttaaatatgttgtttggtctagt
gatatggaatctgtcgcactgctgagcaagcatgcagtggttatagcaaacaagaagctc
gtccatcgctgtacactgcacgaaaccattcgtgtgaaaagtggtgcctgggatgagaat
ggtgtgtttatttacactaccctgaatcatatcaagtattgccttcccaatggagatagt
gggattattaaaaccctcgatgttcctatatacataacaagggttattgggaacaatata
ttctgtctagatcgtgatggtaagaacaagctggtcacagttgatgcatctgagtacatt
ttcaagctggcccttctacgcaaacggtatgatcatgtgatgagtatgatcaagaattcc
cagctgtgtgggcaagctgtgatttcttatttacaacagaaaggctttccagaagttgcc
ctccactttgtgaaagatgagaagacaagatttaaccttgctcttgagagtggtaacatc
caaatcgcagttgcttctgcaaaagagattgatgacaaggatcactggtacaggttggga
attgaggccctgaggcagggaaatgttggtattgtggaatatgcataccaacgtacgaag
aattttgagaggcttgctttcctatatcttattactggttacatggacaaggtgggtttc
atgtgcaaaattgctggacagaacaataacctgatgggtcaattccacaatgctctgtat
cttggtgatgcgttgaagagagttgagatcctagagaatgctggacagctacctcttgct
tatattactgctaccacccatgggctcacagaaattgctgataggcttgccgctgagctg
ggtgaaaatattccttctcttcctgaaggaaaagctcgctctcttttgatcccccctgct
cctcttacagccagtggtgattggccattgcttagggtgatgcatggtatctttgagggt
ggactggatgctactgggaaggctgaacttgaggaagacgatgaagctgctggtgctgac
tggggtgatgaggacctggatatggttgatgcaagcgaagcgatggcaaatggtggtgac
ggttttgatgctgaggagggtgaagcaaatgaggaggatggcgaggaaggtggttgggac
ctagaagatctggaacttccgcctgaagcagagacccctaaaaatgctggcaatgcacgc
tcagcggtcttcgttgctcctccaccaggcatgcctgtcagcctgatttggactcagaaa
tcttctcttgctggggagcatgccgcagcagggaactttgacactgcaatgaggttgctt
agccgccagttgggcataaaaaactttgctcccctcaagcccctgtttgttgatctgcac
atgggcagccactcatatcttcgtgcacttgcaactgcccccataataccaatcgctgtt
gagaaaggttggagcgagtctgcaagtcctaacgtgagaggccctcctgcacttgttttc
accttcccacaaatggaagacagactcaaggctgcctataaggccaccacagatggtaag
ttcccagaagccctgaggcagttccttagcatcttgcataccatccctcttatcgtggta
gactcgaggagggaagtggatgaagtgaaagagttgatcgagattgtgagggagtatgtt
cttggcctgaggatggaacttaagaggaaggagctgagagatgatgtcaaccgccaacaa
gaattggcggcttacttcactaactgcaagcttcagagagttcatatgaggcttgtgctt
ggaagcgctatgggtctgtgctacaagcaaaagaacttcgctactgcagagcactttgca
aggatgcttctggagaacaaccctaatgaggcccaagcaaggagggctcgacaggtgcag
cagcagtgcagtggcaagaaggatagctctgagctgaactatgactacagaaatccattt
gttgtctgtggcgccacgtatgttccaatctaccgtggccagaaggatgtttcctgcccg
tactgtggctcccggtttgttccttcgatcgaagggcagctttgtaccatatgtgagctt
gccgtggttggtgcagatgcttcaggcctcctctgctcccctacgcagtcgagataa
DBGET
integrated database retrieval system
