Oryza sativa japonica (Japanese rice): 4333886
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Entry
4333886 CDS
T01015
Name
(RefSeq) coatomer subunit alpha-2
KO
K05236
coatomer subunit alpha
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4333886
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
osa04147
]
4333886
Membrane trafficking [BR:
osa04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
4333886
Exosome [BR:
osa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
4333886
Exosomal proteins of bladder cancer cells
4333886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
TPR_COPA_B
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Fis1_TPR_C
Beta-prop_DCAF12
Zn_ribbon_19
Zn_ribbon_3
ENTH
zf-CHCC
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-GeneID:
4333886
NCBI-ProteinID:
NP_001405519
LinkDB
All DBs
Position
3:complement(join(29605437..29608390,29609131..29609625,29610212..29610419))
Genome browser
AA seq
1218 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFH
ATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHECPWIVSASDDQTIRIW
NWQSRTCVAVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDISALRKKSVSPADDILR
LTQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWE
VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWILSAHP
EMNLLAAGHDSGMIVFKLERERPAFSVSGDTVFYVKDRFLRFFEFTTQKEVQLAPIRRPG
SVSLNQSPKTLSYSPTENAVLICSDVDGGSYELYIVPKDSAGRADYLQDAKKGAGGSAVF
VARNRFAVLEKSSNQVLVRNLKNEIVKKSPLPIATDAIYYAGTGSLLCKAEDRVTIFDLQ
QRLILGELQAPSVKYVVWSSDMESVALLSKHAVVIANKKLVHRCTLHETIRVKSGAWDEN
GVFIYTTLNHIKYCLPNGDSGIIKTLDVPIYITRVIGNNIFCLDRDGKNKLVTVDASEYI
FKLALLRKRYDHVMSMIKNSQLCGQAVISYLQQKGFPEVALHFVKDEKTRFNLALESGNI
QIAVASAKEIDDKDHWYRLGIEALRQGNVGIVEYAYQRTKNFERLAFLYLITGYMDKVGF
MCKIAGQNNNLMGQFHNALYLGDAMKRVEILENAGQLPLAYITATTHGLTEIADRLAAEL
GENIPSLPEGKARSLLIPPAPLTASGDWPLLRVMRGIFEGGLDATGKAELEEDDEAAGAD
WGDEGLDIVDASEAMANGGDGFDAEEGEANEEDGEEGGWDLEDLELLPEAETPKNAGNAR
SAVFVAPPPGMPVSLIWTQKSSLAGEHAAAGNFDTAMRLLSRQLGIKNFAPLKPLFLDLH
MGSHSYLHALATAPIIPVAVEKGWSESASPNVRGPPALVFTFPQMEDRLKAAYKATTDGK
FPEALRQFLSILHTIPLIVVDSRREVDEVKELIEIVREYVLGLRMELKRKELRDDVNRQQ
ELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATAEHFARMLLENNPNEAQARRARQVQ
QQCSGKKDSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICEL
AVVGADASGLVCSPTQLR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccaagttcgagacgaagagcaaccgggtgaaggggctgagcttccacccgcgg
cggccatggatcctggccagcctccacagcggggtgatccagatgtgggactaccgcatg
ggcaccctcctcgaccgcttcgacgagcacgacggccccgtccgcggcgtccacttccac
gccacgcagccgctcttcgtctccggaggtgatgattacaagattaaggtatggaattac
aagacacaccgttgcctcttcacgcttcatggccaccttgactacattcgcacggtgcaa
ttccaccacgagtgcccgtggatcgtaagtgccagtgatgaccagacaatccggatctgg
aactggcagtcacgcacatgtgtggctgtgctcactgggcataaccattatgtcatgtgt
gcatctttccaccctaaggaggatctggttgtttcagcatctcttgatcagactgtccgt
gtctgggatattagtgctttgaggaagaagtcagtgtcacctgcggatgacatcctgcgt
ctcacccagatgaacacagatctgtttggaggtgttgacgcggttgtaaaatatgtgttg
gaagggcatgatcgtggggtcaactgggcttcatttcatcccacgttgccactaattgtt
tctggggcagatgatcggcaagtgaagatatggagaatgaatgacaccaaggcttgggaa
gttgatactttgcgggggcacatgaataacgtgtcctgtgtgatgttccatgcaaagcaa
gacatcatagtgtccaactcagaggacaaaagcattcgcatctgggatgccacaaagcga
accggtattcaaacgttcaggcgggagcatgatcgtttctggattctttctgctcaccct
gagatgaatcttcttgccgctggtcatgacagtggtatgattgtgtttaaattggagagg
gaacgtccagctttctctgtgagtggagatactgttttctatgtgaaggaccgttttctt
cgtttttttgaattcaccacacagaaggaagttcagcttgctccaataagaagacctgga
tcagtgagcttgaaccagtcacccaagacactatcttacagtccaactgaaaatgctgtc
ctgatttgctctgatgtggatggaggctcatacgaactctacattgttcccaaggattct
gctggcagggctgactatttgcaggatgcaaagaagggggctggtgggtcagctgttttc
gtggcacgcaacaggtttgcagtccttgagaagagtagcaatcaagttttggtgaggaat
cttaagaacgaaattgtaaagaaaagccctcttcctattgccacggatgcaatttattat
gctgggactggtagcttgctgtgcaaagccgaagaccgagtgaccatctttgatctgcag
caaaggttaattcttggcgagctccaggcaccttctgttaaatatgttgtttggtcgagt
gatatggaatctgtcgcactgctgagcaagcatgcggtggttatagcaaacaagaagctc
gtccatcgctgtacactgcacgaaaccattcgtgtgaaaagtggtgcctgggatgagaat
ggtgtgtttatttacactaccctgaatcatatcaagtattgccttcccaatggagatagt
ggaattattaaaaccctcgatgttcctatatacataacaagggttattgggaacaatata
ttctgtctagatcgtgatggtaagaacaagctggtcacagttgatgcatctgagtacatt
ttcaagctggcccttctacgcaaacggtatgatcatgtgatgagtatgatcaagaattcc
cagctgtgtgggcaagctgtgatttcttatttacaacagaaaggctttccagaagttgcc
ctccactttgtgaaagatgagaagacaagatttaaccttgctcttgagagtggtaacatc
caaatcgcagttgcttctgcaaaagagattgatgacaaggatcactggtacaggttggga
attgaggccctgaggcagggaaatgttggtattgtggaatatgcataccaacgtacgaag
aattttgagaggcttgctttcctatatcttattactggttacatggacaaggtggggttc
atgtgcaaaattgctggacagaacaataacctgatgggtcaattccacaatgctctgtat
cttggtgatgctatgaagagagttgagatcctagagaatgctggacagctacctcttgcc
tatattactgctaccacccatgggctcacagaaattgctgataggcttgccgctgagctg
ggtgaaaatattccttctcttcctgaaggaaaagctcgctctcttttgatcccccctgct
cctctcacagccagtggtgattggccattgcttcgggtgatgcgtggtatctttgagggt
ggactggatgctactgggaaggctgaacttgaggaagacgatgaagctgctggtgctgac
tggggtgatgagggcctggatattgttgatgcaagcgaagcgatggcgaatggtggtgac
ggttttgatgctgaggagggtgaagcaaatgaggaggatggcgaggaaggtggttgggac
ctagaagatctggaacttctgcctgaagcagagaccccaaaaaatgctggcaatgcacgc
tcagcggtcttcgttgctcctccaccaggcatgcctgtcagcctgatttggactcagaaa
tcttctcttgctggggagcatgcagcagcagggaactttgacactgcaatgaggttgctt
agtcgccagttgggcataaaaaactttgctcccctcaagcccctgtttcttgatctgcac
atgggcagccactcatatcttcatgcacttgcaactgcccccatcataccagttgctgtt
gagaaaggttggagcgagtctgcaagtcctaatgtgagaggccctcctgcacttgttttc
accttcccacaaatggaagacagactcaaggctgcctataaggccaccacagatggtaag
ttcccagaagccctgaggcagttccttagcatcttgcataccatccctcttatcgtggta
gactcgaggagggaagtggatgaagtgaaagagttgatcgagattgtgagggagtatgtt
cttggcctgaggatggaacttaagaggaaggagttgagagatgatgtcaaccgccaacaa
gaattggctgcttatttcactaactgcaagcttcagagagttcatatgaggcttgtgctt
ggaagcgctatgggtctgtgctacaagcaaaagaacttcgctactgcagagcactttgca
aggatgcttctggagaacaaccctaatgaggcccaggcaaggagggctcgacaggtgcag
cagcagtgcagtggcaagaaggatagctctgagctgaactatgactacagaaatccattt
gttgtctgtggcgccacatatgttccaatctaccgtggccagaaggatgtttcctgcccg
tactgtggatcccggtttgttccttcgatcgaagggcagctttgtaccatatgtgagctt
gccgtggttggtgcagatgcttcaggcctcgtctgctcgcccacacagttgagataa
DBGET
integrated database retrieval system
