KEGG   Oryza sativa japonica (Japanese rice): 4333909
Entry
4333909           CDS       T01015                                 
Name
(RefSeq) vacuolar sorting protein 39 isoform X1
  KO
K20183  Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04142  Lysosome biogenesis
osa04145  Phagocytosis
osa04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagocytosis
    4333909
   04142 Lysosome biogenesis
    4333909
   04148 Efferocytosis
    4333909
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:osa04131]
    4333909
Membrane trafficking [BR:osa04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    4333909
SSDB
Motif
Pfam: Vps39_1 CNH zf-Vps39_C Clathrin DUF8532 TPR_WDR35 AlaDh_PNT_N
Other DBs
NCBI-GeneID: 4333909
NCBI-ProteinID: XP_015631423
UniProt: Q10DX1
LinkDB
Position
3:complement(join(29843947..29844147,29844877..29844975,29845306..29845731,29845992..29846234,29846439..29846660,29847125..29847454,29849113..29849533,29850025..29850137,29850957..29851100,29851172..29851303,29851535..29851746,29852827..29853238))
AA seq 984 aa
MVHSAYDAVELVSGVPGDIVAVAAYAGRLLVAGKDGSLRIYASPGHAGGGIPRDGPYALE
RQQPSLWRRGTPLAMEVSAGRELLLSLAECVNLHRLPGLETVAVIGKTKGANLFAWDDRR
GLLAVGRWKRLTIFRLDSGREFVEVKEFGVPDTVKSMAWCGDNICLGIRKEYMIINSMTG
ALTEVFSSGRNAPPLVVALPTGELLLGKDNIGVFVDQNGKLIQDGRIIWSDTPASVAIHR
PYAVARLPRHVEIRSLRAPNALVQTVVLRDVQKLVETENCILAVLARSVYGLLPVPIGAQ
IVQLTASGEFEEALALCKLLPPEDSNLRAAKESSIHIRYGHFLFDNGSYEEAMEQFSDSH
VDITYVLSLYPSLVLPQTHIIGEHDRLQDLPELARESSDVTDDMEPYSLQLHESDDKSPL
EIKKMSHNALIALVKYLHKKRNGIIERATAEVTEEVVSGAVHHSSILSESYRSKKPNKKR
AQTHTSSIAREMATVLDTSLLQALILTGQSSGAIELLKGLNYCDLKICKEFLEERSDYMV
LLELYKSNEMHREALQLLNQLVEESKAEMGKNDFNKKFNPQMIIEYLRPLCRSDPMLVLE
SSLYVLERNPSDTIELFLSENVPADLVNSYLKQHAPNLQSTYLELMLSMSVSGINPNLQN
ELVQLYLSEVLDWHKILKEEGNWTEKTYSPTRKKLITTLENNSGYNTDILLKRLPQDALF
EERAILYGKINQHLRALSLYVHKLQMPERAVAYCDRVYEEGAQQPSKSNIYFNLLQIYLN
PRKAEKEFEQKIVPVASQYPGIQKVTKVRGARMGKKVVEIEGADDVRFSPSGTDSGRSDG
DGDGDDVSDGGPIMLNEALELLSQRWDRINGAQALRLLPRDTKLQDLVLFLEPLLRNSSE
HRRNYMVIKNLIFRANLQVKEDLYKRRQAVLKIDGDSMCSLCHKRIANSAFAIYPNGQTL
VHFVCFRESQQIKAVRGVNSVKRR
NT seq 2955 nt   +upstreamnt  +downstreamnt
atggtgcacagcgcgtacgacgccgtcgagctggtctccggcgtgccgggcgacatcgtg
gccgtggccgcctacgccgggaggctcctcgtcgcggggaaggacggctccctccgcatc
tacgcctccccgggccacgccggcggcgggatcccgcgggacgggccgtacgcgctggag
cggcagcagccctcgctgtggcgccgcgggacgcccctggcgatggaggtcagcgccggc
cgcgagctcctgctctcgctcgccgagtgcgtcaacctccaccgcctccccgggctcgag
accgtcgccgtcatcgggaagaccaagggcgccaacctcttcgcctgggacgaccgccgg
ggcctcctcgcggtcggccgctggaagcgcctgaccatcttccgccttgacagtgggagg
gagtttgttgaggtgaaggaatttggagttccggataccgtgaaatcaatggcctggtgt
ggcgacaacatttgtcttgggattagaaaggagtatatgatcataaatagtatgactggt
gcattaactgaagtgttttcttctggaaggaatgctccacctttagttgtggctcttcct
actggggagctcctcctgggaaaggataatattggagtatttgttgaccaaaatgggaaa
cttattcaagatggcaggataatttggtcagacacgcctgcctctgttgctatacatagg
ccatatgcggtggcacgcctgccacggcatgttgagatacggtcccttagagcccccaat
gcattggttcagacggttgtacttcgtgatgttcaaaagcttgttgaaactgagaactgt
atacttgctgtgctagcccgctctgtttatggcttgttgcctgttcctattggtgcccag
atagtgcagttgactgcatctggtgaatttgaggaggctctggcgttgtgtaagctactt
cctccagaggattcaaacctacgagctgcaaaggaaagctcaatacacataagatatgga
cactttttatttgataatgggagctatgaggaggcaatggagcagttctctgattcacat
gtggatattacttatgtcctatctctatatccatctcttgttctgcctcaaacgcacatc
ataggtgaacatgaccggctgcaagatctgccagaattagcaagagaatcatctgatgtg
acagatgatatggaaccatactctctacaacttcatgaatctgatgataaatctccattg
gagataaagaaaatgagccacaatgctctaattgcccttgtgaagtatttgcacaagaaa
agaaatggaataattgagagagcaacagctgaagtcaccgaggaggtggtctctggagct
gtgcaccacagctcaatcttatctgagtcatatcgatcaaagaagccaaataagaagcga
gctcagacgcatacaagctctattgctagagaaatggctactgtactggacacatctctt
cttcaagctcttattcttactggacagtcttcaggggcaatagaattgttgaagggactt
aactattgtgatctgaagatatgcaaagaatttttagaggaaaggagcgattatatggtg
ttacttgagctctacaaaagcaatgagatgcaccgtgaagctctccaactgcttaatcaa
ttagttgaagaatcaaaggctgagatgggaaaaaatgattttaacaaaaagttcaatcca
caaatgatcattgaatatctaaggcccctctgtcggtctgacccaatgctggttttggaa
tcatctttatatgtccttgaacgcaacccttcagacactattgagctctttttatcagaa
aatgttccagcagatttagtaaattcatatctaaaacagcatgctccaaatttgcagtca
acttacttggaactaatgctttcaatgagtgtatctgggatcaaccctaatctgcaaaat
gagctggtacaactatacctttctgaggttcttgactggcacaagattctgaaggaagag
ggaaactggactgagaaaacatattccccaacacggaagaagctgataactacattagag
aacaattcaggttacaacacagatatacttcttaagcgtcttccgcaagatgctcttttt
gaagagcgcgctatattgtatgggaaaataaatcaacatctccgtgcactctctctttat
gtgcataagctccagatgccagagcgagcagttgcatattgtgaccgtgtttacgaggaa
ggagcacaacaaccttccaaatcaaatatctatttcaatctcctacaaatctatctgaac
ccaagaaaagctgaaaaggaatttgagcagaaaattgttccagtggcatcacagtaccct
ggaattcagaaggttactaaggttagaggggcgcgtatgggtaaaaaggttgttgagatt
gaaggggctgatgatgtgcgctttagccccagtggaactgatagtggtcgaagtgatggt
gatggtgatggtgatgatgttagtgatggaggcccaataatgttgaatgaagcacttgaa
ttgttaagccaacggtgggatagaataaatggtgcccaagctcttcgtttgttacctaga
gacacgaaactccaggatctggtgttatttcttgaaccacttctgcggaactctagtgaa
catcgacgcaattatatggttatcaagaacttgatttttcgggcaaatttgcaggtaaag
gaggatctgtataaacggcgtcaagctgttctgaagattgatggagatagcatgtgttct
ctttgtcataagcggattgcaaatagtgcttttgctatttatccaaatgggcagacgttg
gtgcattttgtctgctttagagaatcacagcagattaaagctgttagaggagtaaactct
gtgaaacgtagatag

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