Oryza sativa japonica (Japanese rice): 4333930
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Entry
4333930 CDS
T01015
Symbol
B1377B10.8, PHY18, PHYA
Name
(RefSeq) phytochrome A
KO
K12120
phytochrome A
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
4333930 (B1377B10.8)
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
PAS_9
HATPase_c
HisKA
PAS_4
PAS_8
PAS_10
Motif
Other DBs
NCBI-GeneID:
4333930
NCBI-ProteinID:
NP_001405526
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All DBs
Position
3:complement(join(30049893..30050100,30050203..30050499,30050781..30051597,30051815..30053879))
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AA seq
1128 aa
AA seq
DB search
MSSSRPTQCSSSSSRTRQSSRARILAQTTLDAELNAEYEEYGDSFDYSKLVEAQRTTGPE
QQARSEKVIAYLHHIQRAKLIQPFGCLLALDEKTFNVIALSENAPEMLTTVSHAVPSVDD
PPKLRIGTNVWSLFTDPGATALQKALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLV
VDFEPVKPTEFPATAAGALQSYKLAAKAISKIQSLPGGSMEVLCNTVVKELFDLTGYDRV
MAYKFHEDDHGEVFAEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSIK
IIEDESLHLDISLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNENEDDDEVGADQPAQ
QQKRKKLWGLLVCHHESPRYVPFPLRYACEFLAQVFAVHVNKEFELERQVREKSILRMQT
MLSDMLLRESSPLSIVSGTPNIMDLVKCDGAALLYGGKVWRLQNAPTESQIRDIAFWLSD
VHRDSTGLSTDSLHDAGYPGAAALGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAKH
DPSDKDDSRRMHPRLSFKAFLEVVKMKSLPWNDYEMDAIHSLQLILRGTLNDDIKPTRAA
SLDNQVGDLKLDGLAELQAVTSEMVRLMETATVPILAVDSNGLVNGWNQKVAELTGLRVD
EAIGRHILTVVEESSVPVVQRMLYLALQGKEEKEVKFEVKTHGSKRDDGPVILVVNACAS
RDLHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIIHNPSPLIPPIFGADEFGWCSEW
NAAMTKLTGWHRDEVINKMLLGEVFDSTNASCLVKNKDAFVSLCILINSALAGDETEKAP
FSFFDRNGKYIECLLSVNRKVNADGVITGVFCFIQVPSHELQHALHVQQASQQNALTKLK
AYSYMRHAINNPLSGMLYSRKALKNTGLNEEQMKEVNVADSCHRQLNKILSDLDQDSVMN
KSSCLDLEMVEFVLQDVFVAAVSQVLITCQGKGIRVSCNLPERYMKQTVYGDGVRLQQIL
SDFLFVSVKFSPVGGSVEISCSLTKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDD
NKEQSDEGMSLAVSRNLLRLMNGDVRHMREAGMSTFILSVELASAPAK
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcaagacctactcaatgttccagttcatccagcaggacccgccaaagctcc
cgggcaaggatattagcacaaacaactcttgatgctgaactcaatgctgaatatgaagaa
tatggcgactcctttgattactccaaattggttgaagcacagagaactactggacctgag
cagcaagctcgttctgagaaggtcatagcttacttgcatcacattcagagagcaaagcta
atccaaccatttggttgcttgttggcccttgatgagaagaccttcaatgttatagcgctc
agcgagaatgcaccagagatgcttacaactgtcagccatgcagtgccaagtgttgatgat
cccccaaagctacgcattggcaccaatgtatggtctcttttcactgacccaggtgccaca
gcactgcagaaggcactgggatttgctgatgtttccttgctgaaccctatcctagttcaa
tgcaagacctcaggcaagcctttctatgccattgttcatcgggcaactggttgtttggtg
gtagactttgagcctgtgaaacctacagaatttccagcaactgccgctggggctttgcaa
tcttacaaacttgctgccaaggcaatctctaagatccagtcactgccaggtggaagcatg
gaggtgctatgcaatacggtggtcaaggaactctttgacctcacaggatatgatagagtt
atggcttataagttccatgaagatgaccatggtgaagtctttgctgagatcacaaagcct
ggtcttgaaccttatcttggcctgcattatccagctactgatatccctcaggcagccagg
tttcttttcatgaagaacaaagtccggatgatttgtgattgccgtgcaagatctatcaag
attatcgaagatgagtcgctccacttggatattagcttatgtggttcaacactgagggca
ccacacagttgtcatcttcagtatatggagaacatgaactcgattgcatcccttgtcatg
gctgttgtggttaatgagaatgaggatgatgatgaagttggggctgatcaacctgcacaa
cagcagaagaggaagaaactatggggactccttgtttgccaccatgagagccccagatat
gttcctttcccattgcggtatgcctgtgagttcttagcacaagtgtttgctgtccatgtt
aacaaggagtttgaattagagaggcaagtacgcgagaaaagcatattgaggatgcaaaca
atgctctctgacatgcttctcagggaatcctctcctctgagtatagtatcagggactccc
aacatcatggaccttgtgaaatgtgatggtgctgctcttttgtatgggggaaaagtgtgg
cggctacagaatgctccaactgagtctcagatacgtgatattgccttctggctgtcagat
gtccacagggattccactggcctgagtactgatagcctacatgatgctggatatccagga
gctgctgctcttggtgatatgatttgtggaatggcagtagctaaaataaattccaaggat
atcctgttctggttcaggtcacatacagctgctgaaatcagatggggaggtgcaaaacat
gatccatcagacaaggatgacagcagaagaatgcaccctaggctgtccttcaaggcattc
cttgaggttgtcaagatgaagagcttgccttggaatgactatgagatggatgctattcac
tcattacaacttatacttagagggacactgaatgatgacatcaagccaacaagggccgct
agtttagataatcaggttggtgatctcaagcttgatgggcttgctgaattgcaggcagtt
acaagtgaaatggttcgtctcatggaaacagcaactgtcccaatcttggctgtagatagc
aatggattggtcaatggatggaatcagaaggttgctgagttgacagggttgagagtagat
gaggctattggaagacacatacttaccgttgtagaggaatcttctgtaccagttgtccag
aggatgctgtatttagctttgcaaggcaaagaagagaaggaagtgaaatttgaggtgaaa
actcatggctccaagagagatgatggccctgttatcttggttgtgaatgcctgtgccagc
cgggaccttcacgaccatgttgttggtgtgtgctttgttgcacaagatatgactgttcat
aagttggtcatggacaaatttactcgggttgagggagactacaaagcaattattcacaat
ccaagcccgcttattcctcccatatttggtgctgacgaatttggatggtgctctgagtgg
aatgctgccatgacgaaattgaccgggtggcatagagatgaggtgatcaataagatgctt
cttggtgaggtgtttgatagcaccaacgcctcctgtcttgtgaagaataaagatgcattt
gtaagtctctgcattcttatcaacagtgcattagctggtgatgaaacagaaaaggctcca
ttcagcttcttcgaccggaacgggaagtatatcgagtgccttctttctgttaacagaaaa
gtaaatgcagatggtgtcatcactggagtattttgtttcattcaagttcctagtcatgag
ctgcaacatgcactacatgtgcagcaagcctcacagcagaatgcactaacaaagttgaaa
gcttactcctacatgagacatgcaatcaacaaccctctctcaggtatgctttactctagg
aaagcactgaagaacacaggtctgaatgaagagcagatgaaggaggtcaatgttgcagat
agttgtcaccgccagctgaataaaatactttctgacttggatcaagatagcgtcatgaac
aagtctagttgcttggatttggagatggttgagtttgtattgcaagatgtgtttgtggct
gctgtaagtcaagtactcataacttgccagggaaaagggattagagtctcttgcaaccta
ccggagagatatatgaagcaaacagtctacggggatggtgttcgactacagcagattctc
tctgacttcctattcgtctcagtgaagttctctcctgttgggggttctgttgagatctct
tgtagcctgaccaagaacagcattggggaaaaccttcatctcatagacctagaacttagg
atcaagcaccagggcaaaggagtcccagcagatctgctgtcacaaatgtacgaggatgac
aataaggagcagtcggatgaaggcatgagtcttgcggtttctagaaacctgctgaggctc
atgaatggcgatgtccgacatatgagggaagctggcatgtcaaccttcatcctcagcgtc
gaacttgcttctgctccagcaaaataa
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