Oryza sativa japonica (Japanese rice): 4333941
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Entry
4333941 CDS
T01015
Name
(RefSeq) SWI/SNF complex subunit SWI3D isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
4333941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4333941
03036 Chromosome and associated proteins [BR:
osa03036
]
4333941
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
4333941
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
4333941
PBAF complex
4333941
GBAF(ncBAF) complex
4333941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Myb_DNA-bind_7
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
4333941
NCBI-ProteinID:
XP_015632282
LinkDB
All DBs
Position
3:join(30176953..30177364,30178537..30179078,30179990..30180715,30180793..30180959,30181037..30181572,30182141..30182337,30182426..30182674)
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AA seq
942 aa
AA seq
DB search
MEPKSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHS
GPLTRAARQSPHKLAEEAAAAAAAGAGGSEAGGGKGGGDVIRLEGEEAPTEETPLVDEVF
EAVRSRGAGVHVVPTFAGWFSWKEIHPIEKQMLPSFFNGKSDKRTPEIYLGIRNFIMLKF
HANPQLQLESKDLAELSIGEADAHQEVLKFLDHWGLINFHPFLPAGQEESKPEEAHGKSH
SEEKASVLEQLFKFESVQSYMIPLPKKGEVETPAPLPSLLPDPALIEDVVSAAEPSVEYH
CNSCSVDCSKKRYHCRTQADFDLCSDCYNEGKFNIGMAKTDFILMDSSEVSGASGTSWTD
EETLLLLEALEIFGGKWTEIAEHVATKTKAQCMLHFLQMQIEDRFHGDEDINQNIQENTE
QASAEKGAAEIPDKMEVEEKAEGKDTAGEKTPEKAEGNSVEAQTEDGNAIENKDANNSGG
TDSVKSLNTDEPKKSSDADPPKSSSDAEPVVKENSVDVDTSRENASNFAIDTLKSAFEAV
GYFPEHEGSFADAGNPVMALASFLAGLVEDDTATNSCRSSLKAISEVSPALQLATRHCFI
LEDPPSDVKDMSGNASTTSTDGDKRKDKDKTQDSIDSEVEGINKKGETVLSVEGKKSSPI
SPKGQDTDKKDECDEDPSVDPKHNNGKESDDPVSLDKSVSNNKKGINSSKDSVTPLNITN
QCGMITSQGFVTGNTMETSNPEMIEDKASSEVNPADDSSLEGKVEMKKTKDAVANATTAQ
EQKQSQILENGKMEEPKSTEDVAADEENSSRVTANLTDSITRLKRAAATAISAAAVKAKL
LADHEEEQVRQLAALMIDKLYRKVEAKVSFLTEVEHLVQRTREYTEKTRKKLLMERNAII
AARMGSLPSRPNQPGAAGNRLPAGYGGPIVRPPPNAMPRPSS
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggagcccaagtcgtcggcgtcggcggctcatcaggggggcgacgcgccggccgaggcg
ccgcgcaggcgcggcggcggcgggaagcgcaagtcgggcgggtcgtcgttcaccccgtcg
aagaggcacgccaaggagcggaacgcggccttccacgtgccccctcacctgctgcacagc
gggccgctcacccgcgccgcgcgccagtcgccgcacaagctcgcggaggaggcggcggcc
gcggcggcggcgggggccggcggatcggaggcgggcggcgggaagggtggcggggacgtg
atccggctcgaaggggaggaggcgcccaccgaggagacgcctctggtggacgaggtgttc
gaggccgtccgatcccgcggcgccggcgtccatgtggtccctaccttcgccggatggttt
tcatggaaggaaatccacccaattgagaagcaaatgttgccttcttttttcaatggcaaa
tctgacaagcggacacctgagatatatttagggatcagaaatttcatcatgttgaaattt
catgctaatcctcagttgcagctggagtccaaagatttggctgagctatcgattggggag
gctgatgctcatcaggaagtgttgaagttcctggaccactggggcttgatcaatttccac
ccttttctaccagctggacaagaggagagtaagccagaggaggcccatggcaagtctcac
agtgaggagaaagcttcagtgcttgaacagctgtttaaatttgaatcagttcaatcatat
atgatccctttaccaaagaaaggggaagtggaaactccagctcctctgcctagtttgctt
cctgatcctgcactaattgaagatgtagtttcagcagccgagccctctgttgagtaccat
tgcaattcctgctctgttgattgctcaaagaagcgttaccattgccggacccaggcagat
tttgacctttgttctgattgctacaacgagggaaagtttaatataggcatggcaaaaacc
gatttcatcctcatggattcttctgaagtttctggtgctagtggtactagttggactgac
gaagagacattgcttcttttagaagctttggaaatttttggtggaaaatggactgagata
gctgaacatgttgctacaaaaacaaaagctcagtgcatgctgcacttccttcaaatgcaa
attgaggaccgctttcatggcgatgaagatattaatcaaaatatccaggaaaacacagag
caagcttcagcagaaaaaggcgctgctgaaatacctgataaaatggaagttgaagagaaa
gcagaaggaaaagatactgcaggtgagaaaactccagagaaagcagagggcaatagtgta
gaagcacaaacggaagatggaaatgctattgaaaataaagatgccaataattcaggtggc
acagattcagttaaatctctaaacactgatgagccaaaaaaatcttctgatgctgaccca
ccgaaaagttcatccgatgctgaacctgtagtgaaggaaaattctgttgatgttgatact
tctcgtgaaaatgcatcaaactttgctattgatacattgaaatccgcatttgaggctgtt
ggttacttcccagaacatgaaggttcatttgctgatgcaggaaatcctgttatggcactg
gcatcatttttagctggtcttgtggaagatgacactgcaaccaattcatgtcgaagttca
ctaaaagctatctctgaggtttctcctgcacttcagttggcaactagacactgctttatt
cttgaggatccaccaagtgatgtgaaagacatgtctggcaatgcaagtactacaagcaca
gatggtgataaaagaaaagacaaggataagactcaagattcaattgatagtgaagtggaa
ggcataaataaaaagggagagacggttctatctgttgaagggaaaaaaagttctcccatt
tcaccaaaaggccaagacacagacaaaaaggatgaatgtgatgaggacccctcagtggat
cctaaacacaataatggtaaggagtcagatgatcctgtttctctggataaaagtgtgtcc
aacaacaaaaaaggtataaactccagtaaagattcagttactccactgaatattacaaat
caatgtggtatgataacttctcaagggtttgtcacaggaaataccatggaaacaagtaat
cctgaaatgatagaggacaaagcaagttctgaagtcaaccctgctgatgattcatcttta
gaaggcaaggttgagatgaagaagaccaaagatgcagttgctaatgcaactaccgcacag
gaacaaaagcaaagccaaatattggaaaatggcaagatggaagaacctaagagtactgaa
gatgttgctgccgatgaagagaacagctctagagtaaccgccaacctcacggattccata
actaggctgaaacgagcagccgctacagctatttctgcagctgctgtgaaggcaaaactc
cttgctgaccatgaggaagaacaagtccgtcagctggctgcgctgatgattgacaaactg
tatcggaaagtagaggcgaaggtgtcttttctcaccgaagttgaacacctggtccagaga
acaagagaatacactgaaaagactagaaagaagcttctgatggagcgaaatgcgataatc
gctgcccgcatgggttcattgccatctaggccaaaccagcccggtgcagccggcaacaga
ttaccagctggatatggaggccccatcgtgagaccaccaccaaacgcaatgccccgccct
agcagctga
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