KEGG   Oryza sativa japonica (Japanese rice): 4333983
Entry
4333983           CDS       T01015                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 16
  KO
K14810  ATP-dependent RNA helicase DDX56/DBP9 [EC:5.6.2.7]
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:osa03009]
    4333983
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     4333983
Ribosome biogenesis [BR:osa03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    4333983
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 4333983
NCBI-ProteinID: NP_001405558
LinkDB
Position
3:join(30647357..30647737,30648207..30648371,30648645..30648734,30648836..30648964,30649395..30649495,30649853..30649967,30650214..30650345,30650977..30651042,30651399..30651578,30651817..30651912,30652032..30652169,30653133..30653215,30653520..30653557,30653641..30653861,30654985..30655062)
AA seq 670 aa
MAAAAAASSMAKRKQRKAATEQEVENHDEATVAAEAGPENDGHTAHAAEEAAAAEEGVER
EGGGEGGAEGEEGPDAAARGGEEGKEEEEREVSFDELGLDEQLKRALRKKGLDKATPIQR
EAIPLILEGKDVVAKAKTGSGKTFAYLLPMLHELLKLSAEGRIRKSAPNVFILVPTRELC
QQVHNEASSLLEFCTSKLKVVQVNASMSDKDIKVALSGPPNILVTTPACVASCISKGIIR
GSSIKESLSMMILDEADLLLSYRCEDDIKALVPHIPRSCQSILMSATSSADIEKLTKLLL
HNPFILTLTEVGHAKDDLIPKNVQQFWISCDAKDKMLYILVLLKLELIQKKVLIFVNSID
SAFKLRLFLEKFGIRSSVLNAELPQNSRLHIIQAFNARLFDYLIATDDNKSKEERQANKG
NKKDSRVSRKQLQQTLDAEFGVVRGIDFKNVFTVVNYDMPPDPAGYVHRVGRTGRANKTG
ASISLVSPKENGIFEDIENMLKDVENRDTSCISPFPLLTKNAVESLRYRAQDVARSVTTR
DIKEARRQDIKNEILNSEKLKAHFDENPRDLDLLKHDKLLSNKEIPAHLRDVPEYLIDPT
TKEASNVVKLSRAAMDIDKPRRRKRMGFKGGSGRSSDPLKTFSAEGKSRRRGRKERDGEQ
DRRKRKKVES
NT seq 2013 nt   +upstreamnt  +downstreamnt
atggccgccgccgccgccgcctcctccatggcgaagcgcaagcaacgcaaggcggcgacg
gagcaggaggtagagaaccacgacgaggccactgtcgccgcggaggcggggcccgagaat
gacgggcacacggcgcacgccgccgaagaggctgcggccgctgaggagggtgtcgagcgc
gaaggaggaggcgagggcggcgcggagggggaggagggcccggacgctgcagccagggga
ggtgaggagggcaaggaagaggaggagagggaggtgagctttgacgagcttggcttggac
gagcaactgaagagggctttgaggaagaagggcttggacaaggccaccccgatccagaga
gaggccatcccgctcatcctggaagggaaggatgtggtcgctaaggccaagactggctcc
ggaaagacctttgcttaccttctccctatgctgcatgagctattgaagttgtctgcagaa
gggcgtatccgaaaatctgctccaaatgttttcatccttgtgccaactcgcgagttatgc
cagcaggttcataatgaggcatcatctctccttgaattctgtacatccaaattgaaggtt
gtgcaagtgaatgcgagcatgtcagacaaagatattaaagttgcattgtctggcccccct
aatatacttgttacaactcctgcttgtgttgcatcatgcatatcaaagggcattatccgt
ggatcatctatcaaagaatcactatcaatgatgattctagacgaggctgacctcctccta
tcctatcgttgtgaagatgacataaaagctctcgttccacatatcccaagaagctgccag
tccatcctgatgtctgcaacgtcaagcgctgatattgagaaactgactaagctacttctg
cacaacccttttattctgacccttacggaggttggtcatgcgaaggatgatttgatccca
aaaaatgtgcagcagttttggatatcatgtgatgctaaggataagatgctttatatcctt
gtactcctgaagttggagcttattcagaagaaagttctcatatttgtaaactcaattgac
tcggcattcaaattaaggctgtttctggagaagtttgggataagatcttcagtgctaaat
gctgaattaccacaaaattcacgcctccatatcattcaggcattcaatgctaggctattt
gattatctgatagcaacggatgacaataagtctaaagaggagaggcaagccaataaggga
aacaaaaaggattctagggtgtcacgcaagcagttgcagcaaactttagatgctgaattc
ggtgttgtcagaggaattgacttcaaaaatgtattcacggtagttaattatgacatgcct
ccagatcctgctgggtatgttcacagagtaggaaggacagggagagcaaataaaactggt
gcatccatatcgcttgtttcaccaaaggagaatggcatttttgaagatattgaaaatatg
ttgaaagatgttgaaaatagagacaccagttgcatttcacctttcccattacttacaaaa
aatgccgttgagtctttacgctatagagctcaggatgttgccaggagtgtgacaacccgt
gatataaaagaagcacgtcgccaagacataaagaatgaaatcctcaactctgagaagttg
aaggctcattttgatgagaatccgagagaccttgatttgctcaaacatgataagttattg
agcaacaaggaaatccctgcacacctacgtgatgtccctgagtaccttattgatcccaca
acaaaagaagcaagcaatgtagtcaaactttcaagggctgctatggatatcgataagcca
cggaggaggaaaagaatgggattcaagggaggatctggcagaagtagtgatccccttaag
actttctctgctgaggggaaatcacggaggcgagggaggaaggaaagagacggagaacag
gatagaagaaagaggaagaaggtggaaagctaa

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