KEGG T01015: 4334027

Oryza sativa japonica (Japanese rice): 4334027

Entry

4334027           CDS       T01015

Name

(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1

K12605

CCR4-NOT transcription complex subunit 2

Organism

osa Oryza sativa japonica (Japanese rice)

Pathway

osa03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:osa00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4334027
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4334027
Messenger RNA biogenesis [BR:osa03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4334027
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     4334027

SSDB

Motif

Pfam:

NOT2_3_5_C

Other DBs

NCBI-GeneID:

4334027

NCBI-ProteinID:

XP_015630450

LinkDB

Position

3:complement(join(31040461,31040551..31040636,31040717..31040861,31049484..31049525,31049629..31049681,31049869..31050294,31050432..31050509,31050584..31050669,31052503..31052607,31052670..31052876,31053977..31054334,31054460..31054623,31054707..31054815,31055388..31055405))

AA seq 625 aa
MSGLLNSNLNNSASNLQDSSGRPFTASFSGQSGSVPGAFHHSGLHNIHANFNLPNMPGSL
AQRNAAMSGLPSSGVQQPGGSISARFASNNLPVGMSQLPHGHSGVSSRVNVGGGPAFSSS
LNIGGTIQGLSSNLGAGGNRNSVPGMSVSPALGNLGPRITGSVGNIVGGSNIGRNISSGG
LSVPSIASRMNLSGNIGSGGLNVQGSSRMMNGILQQGSPQMMNMMGSSYPTSGGSLSQNQ
IQGGNNSLGSMGMLHDANDSAPYDMNDFPQLTGRPSSAGGPQGQYAGSLRKQGVGVNTIV
QQNQEFSIQNEDFPALPGYKGSTSDYAMELHHKEQLHDNVPVMQAQQYPMSRSVGFNLGS
NYPPNRQQHQQGANSVQNAGPQNIGLRSSASQTSSLGSYEQLIQQYQQPQTQNPFRLQQV
SSATQSYRDQSLKSIQGGQTPPDPYGLMGLLGVIRMNDADLASLALGMDLTTLGLNLNSP
DNLYKTFGSPWSNEPAKGEPEFHIPACYNAEQPPPLQPIHFQKFQTLTLFYIFYSMPRDE
AQLCAASELYNRGWFYHKEVRVWLTRIPNVEPLVKTPHYERGSYGCFDPNNWETIRKDNF
VLHYDQIEKKPAIPSSSQTVRGNIS

NT seq 1878 nt +upstreamnt +downstreamnt
atgtcaggcctactgaattcaaacctgaacaattctgcatcaaaccttcaagactcatct
ggaagaccgtttacagcatccttttctggtcaatctggatcagttccaggggcgttccat
cactctggcttgcacaacatccatgcaaattttaatctgccaaatatgcctggatcgctt
gctcagaggaatgctgccatgagtggccttccatcctctggggttcaacagcctggaggg
agcatttctgcaagatttgcttcaaacaaccttccagttggaatgtctcagcttcctcat
gggcattcaggagtcagttctagagtgaatgttggcggaggtccagcatttagtagtagc
ttgaatattggaggtaccattcaaggcttatcctcaaacttgggtgctggtggtaatcgg
aattctgttcctgggatgtcagtatctccagctttgggaaatttgggccctaggatcact
ggttctgtaggaaatattgtgggtggaagtaacattggaaggaatataagctctggtgga
ttatctgtgccaagcatagcatcacgcatgaatttgagtggcaatattggcagtggcggt
ctaaatgtccaaggatccagcaggatgatgaatggcattcttcagcaaggatcgcctcaa
atgatgaacatgatggggagttcatatccgacgtctggaggttcattatctcagaaccaa
atacaaggaggaaataattcccttggttccatggggatgctgcatgatgccaatgacagt
gctccatatgacatgaatgattttccccaattgactggtcgacctagttctgctggtggt
ccgcaaggacaatatgcaggctcactgcggaagcaaggagttggtgttaacaccattgtt
caacaaaaccaggaatttagcattcaaaatgaagacttcccagctttacctggatacaaa
ggtagcacttcagattatgctatggagttgcatcacaaggaacaacttcatgataatgtg
cctgttatgcaagcacagcaatatccgatgtcaaggtcagttggctttaatttaggaagt
aactacccaccaaatcgtcagcaacaccagcaaggtgctaattcagttcagaatgctggt
ccccaaaatatcggattaagatcttctgcaagtcaaacttctagtttgggatcatacgag
caacttatccaacaataccagcagcctcaaactcaaaatcctttcagattgcagcaggtg
tcttcagctacacagtcatacagagatcaaagtctaaagtccatccagggagggcaaaca
ccacctgatccttatggtttgatgggattgctgggagttatcaggatgaatgatgctgac
ttagcatctcttgctttaggaatggatttgacaacattgggtttaaacttgaactcacca
gacaatctatacaagacatttggttctccatggtcaaatgagccagcaaaaggagaacct
gagtttcatattccagcttgctacaatgctgagcaacctccaccgctacaacctatacat
tttcagaagttccagacgttaacgctgttttacatcttctatagcatgccaagggatgaa
gctcagctatgtgctgctagtgagctttacaaccgaggatggttttatcataaagaagtg
cgagtgtggctcacaagaattccaaatgttgagcctctggtcaaaactcctcattatgaa
cgagggtcttacggttgctttgatccaaacaactgggagacaatccgcaaggacaatttt
gttcttcattatgaccaaatagagaagaagccagctatcccatcttcgtcccaaactgtt
aggggaaacatttcttga

DBGET integrated database retrieval system