Oryza sativa japonica (Japanese rice): 4334058
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Entry
4334058 CDS
T01015
Name
(RefSeq) DNA repair protein XRCC4
KO
K10886
DNA-repair protein XRCC4
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
4334058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
osa03400
]
4334058
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
4334058
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRCC4
XRCC4_CC
XLF
LTI65_LTI78_N
CCDC113_CCDC96_CC
DUF3810
V_ATPase_I
Motif
Other DBs
NCBI-GeneID:
4334058
NCBI-ProteinID:
XP_015631232
UniProt:
Q75KV7
Q7Y1H0
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All DBs
Position
3:join(31278270..31278578,31279678..31279806,31279991..31280113,31280407..31280670)
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AA seq
274 aa
AA seq
DB search
MATSTAAPRHSCAKLSVAVEDPKAGGGGAVFVKATWHPTRFSLAVTDGGAAWVAQASDAE
VRLRAEQWDQPVADYLALAERYLAFQQPSSTYSFHDAANGNRRLSWTFEKQGTKLEWRWK
LQPAPNTQQTIAEILDFLMDANIRLSEEVVRKTQSFDKLKQESEKCLQQSERFNIEKAEF
EQSTFSKFVAVLNSKKAKLRQLKDKLTEFESADKAPKEEDENSTDKTELFEEASDKDASV
NDEPSETGGGDLHSSPEKTAATSRGGRGRKRTRK
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctcgacggcggcgcccaggcacagctgcgcgaagctctcggtggcggtggag
gaccccaaggcgggcggcggcggagccgtcttcgtgaaggccacgtggcaccccacgcgc
ttctccctcgccgtcaccgacggcggcgccgcgtgggtcgcccaggcctccgacgccgag
gtgcgcctccgcgccgagcagtgggaccagcccgtcgccgactacctcgccctcgccgag
cgctacctcgccttccagcagccctcctccacctactccttccacgacgccgccaacggc
aatcgaaggctgtcatggacatttgagaaacaaggcaccaagttagaatggcgatggaaa
ctgcagcctgcacctaacactcagcagactatagctgagatcttggattttcttatggat
gcaaatatacgcttgagcgaagaggttgttaggaaaacacaatcctttgacaagttgaaa
caagaatctgagaagtgcttgcaacaaagtgaaagatttaacattgagaaagctgagttc
gaacaatccacattttcaaagtttgtggctgtcttaaattcgaagaaagccaagctcaga
caactcaaggacaaactcacagaatttgaatctgctgacaaggctccaaaggaggaggat
gagaactccactgataagacagagctttttgaggaagcaagtgacaaagatgcaagcgtt
aatgatgaaccctctgagactggtggcggcgatcttcatagctctcctgagaaaactgca
gccacctccagaggggggaggggtcgcaagaggactagaaaatag
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