KEGG   Oryza sativa japonica (Japanese rice): 4334111
Entry
4334111           CDS       T01015                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4334111
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4334111
   03012 Translation factors [BR:osa03012]
    4334111
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     4334111
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     4334111
Translation factors [BR:osa03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    4334111
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N DEAD dsrm AAA_22 nSTAND3 ATPase T2SSE AAA_19 ABC_tran AAA_23 AAA_16 NACHT ATPase_2 Myosin_head
Other DBs
NCBI-GeneID: 4334111
NCBI-ProteinID: XP_015630592
UniProt: A0A0P0W309
LinkDB
Position
3:complement(join(31698707..31699195,31699629..31699739,31699832..31699984,31700153..31700212,31700299..31700607,31700766..31700914,31701006..31701075,31701176..31701379,31701982..31702176,31702391..31702663,31702756..31702926,31703009..31703139,31703229..31703388,31703518..31703706,31703829..31703924,31704187..31704417,31704521..31704608,31704709..31704863,31704966..31705184))
AA seq 1150 aa
MRGGLRRGLGILLLPLSSSPSRAPRPPVPLAALLVYHRRLDVFARRSFCSSGGGYAVEQF
SDDEYDHEYEDHRPSSSVANIDEWRWKLSMLQRNAEEQEIISRDRRDRRDYDQIANLAKR
MGLYSEMYGKVIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEHLDRALLPD
KCGTGNGSEMAEKAENVNLDEQQDSLLDRSVMEKILQRKSIRMRNFQRSWQESPEGVKML
EFRKSLPAYKEKERLLAAIARNQVIVISGETGCGKTTQLPQFVLESEIESGRGAFCNIIC
TQPRRISAMAVAERVSTERGENLGESVGYKVRLEGIKGKDTHLLFCTSGILLRRLLSDRN
LNGVTHVFVDEIHERGMNEDFLLIVLKDLLSRRRDLRLILMSATLNAELFSSYFGGAPTI
HIPGFTYPVRAHFLEDILERTGYKLTSSNQLDDYGQDKVWKTQRQLLPRKRKNQITTLVE
DALKTSSFETYGSRTRDSLSNWNPDCIGFNLIEAVLCHICRKERSGAVLVFMTGWDDISC
LKDQLKAHPLLGDPNRVLLLACHGSMATAEQRLIFEKPPPNVRKIVLATNMAEASITIND
IVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYDA
FADYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPAPLAVQNAVEFLKMIGALDE
NENLTDLGRYLSMLPVDPKLGKMLIMGAVFRCIDPILTVVAGLSARDPFLLPQDKRDLAG
TAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSYI
LKDAGLVDSDANTNNSLSHNQSLVRGIICSGLFPGITSVVHRENSMSFKTMDDGQVLLYA
NSVNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGAVTKGSMAGHLKMLDG
YIDLFMDPSLCECYLQLKEELDKLVQKKLEDPSFDIHKEGKYILYAAQELAAGDLCEGRF
VFGRETSRARLSSSDDTKGNIIKDGMNPKSLLQTLLMRAGHTPPKYKTKHLKTNEFRAIV
EFKGMQFAGKPKRNKQLAERDAAIEALGWLTQTSGTKLQDDGDDSPLDLTDNMLKLLSRP
RRRSRNNSRK
NT seq 3453 nt   +upstreamnt  +downstreamnt
atgcgcggcggcttgcgccgcgggctgggcatcctcctcctcccgctctccagctcgccc
agccgggcgccgcggccgccggtcccgctcgctgctctgctcgtctaccaccgccgcctc
gatgtcttcgcccgccggtccttctgcagctccggcgggggctacgccgtggagcagttc
tccgacgacgagtacgaccacgagtacgaggatcaccggccgtcgtcgtcggtggcgaac
atcgacgagtggaggtggaagctgagcatgctgcagcgcaacgcggaggagcaggagatc
atctccagagaccggagggatcgccgggactacgaccagatcgccaacctcgccaagagg
atgggcctctacagtgagatgtatgggaaggtcattgttgcgagcaaggtcccgctgccg
aattacaggccggacctggacgacaagcggccacaaagagaggtggtgattccattaagc
ttacagaggagggttgaaggacttgtgcaggagcaccttgatcgtgcactcttgccggat
aaatgtggaactggaaatggttctgagatggctgagaaagctgagaatgtgaacctggat
gagcagcaggattcccttctcgatcgatcggtcatggagaagatccttcagaggaagagc
atacggatgcgcaattttcagagaagttggcaggaatcacctgaaggagttaagatgcta
gaattccggaaatcacttcctgcatacaaggaaaaggaaaggcttctagcagccattgca
cgcaatcaggttatagtgatatctggagagacagggtgtggcaaaacaacccagttgcct
caatttgtattagagtcagagatagaatctggccgtggggccttttgtaatataatctgc
acacaacctcggagaatttctgcaatggcagttgcagagagagtatccactgagagagga
gagaatcttggtgaatcggttggctacaaagttcgattggagggaatcaaaggaaaagac
acacatttgcttttctgcacaagtggtatattactacgacgattgctcagtgacagaaac
ctgaatggagtaactcatgtatttgttgatgaaatacatgaaagaggcatgaatgaagat
ttcttattgattgtcctaaaagacctattatcacgacgccgtgatttgaggttgatcttg
atgagtgctactctaaatgcggaactgttctcaagttattttggaggagcaccaactatc
catattcctggattcacatatccagtgagggcacattttctggaagatatattagagagg
actggctataagttgacctcaagcaatcaacttgacgattatggacaagataaagtctgg
aaaactcagaggcaactattacctagaaaaaggaaaaatcaaatcacaacgcttgttgag
gatgcccttaaaacttctagctttgagacctatggatcgaggacacgcgattctctgtca
aattggaatcctgattgcatagggtttaaccttatagaagctgttctttgccacatatgt
cgtaaagagcggtctggtgcagttctagttttcatgaccggatgggatgatatcagttgc
ttgaaggatcaactaaaggcacaccctttgttgggcgaccctaacagagttttactgctt
gcatgccatggttccatggctacagctgaacagaggttaatctttgagaagccacctcct
aatgttcggaagatagtgcttgccactaacatggcagaagcaagtattacaataaatgat
attgtttttgtcgtggattgtggaaaggcaaaggaaacgacatacgatgcactaaataac
actccctgcttgcttccctcatggatttcaaaggcttctgctcgtcagaggaggggcaga
gctggtcgtgtgcaacctggagaatgctatcacctctaccctagatgtgtgtatgatgca
tttgcagattaccagcttcctgagctccttagaactccattgaattcactatgtttgcag
ataaaaagtttgcaagttggcagcattggggagtttctatcagctgccttacagcccccg
gcaccactagctgtccaaaatgcagtggaattcctgaaaatgattggagcattagatgaa
aatgagaacctaactgatctaggaagatacctttccatgcttcctgttgatccaaagttg
gggaagatgcttataatgggtgcagttttccgctgcattgatcctatacttaccgtggtt
gctggattgagtgcccgggatcctttcctgctgccacaggacaagagagatttggcagga
accgccaaatcaagattctcagcaaaagattatagtgatcatatggccctagtccgggct
tatgaaggatggaaggatgcagagagagaagggtctgcttatgaatactgctggagaaat
ttcctttctgctcaaacacttcaagccattcactctcttcggaagcaattcagctatata
ttaaaggatgctggtttggtagactctgatgcaaatacaaataatagtttgagccataat
caatcattggtccgtggtatcatatgttctggacttttcccaggcataacatcagttgtg
catagagaaaactctatgtcgttcaagaccatggatgatggccaagttcttctttatgct
aattcagtgaatgctaagtaccagaccatcccttatccatggctggtctttggtgagaag
gtgaaggtaaatgctgtcttcatccgtgactcaaccggagtatcagattccatcctgatc
ttatttggtggtgctgttacaaaaggaagcatggctgggcacctgaagatgctcgatggt
tacatcgatttgtttatggatcctagcctgtgtgaatgctacttgcaacttaaagaagag
cttgataaacttgtacagaagaagcttgaagaccccagcttcgacatccacaaggaagga
aagtacatcttatatgccgcacaagagctcgctgcaggcgacctatgcgaaggaaggttt
gtgtttggccgcgagacgagcagagcaaggctcagcagcagcgacgacaccaaaggcaac
attatcaaggacggaatgaaccccaagagcctgctccagaccctgctgatgagggccggc
cacacccctcccaagtacaagacaaagcacctcaagaccaacgagttcagggccatagtg
gagttcaaagggatgcagtttgccgggaaacccaagaggaacaagcagctcgccgagagg
gacgccgccattgaagcgctgggatggctgacacagacctcagggacaaagcttcaggat
gatggcgatgattcccctcttgacctgacggataacatgctgaagttgctcagtagaccg
aggcggcggtccagaaacaattccaggaaatga

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