KEGG   Oryza sativa japonica (Japanese rice): 4334149
Entry
4334149           CDS       T01015                                 
Name
(RefSeq) cleavage stimulation factor subunit 50
  KO
K14406  cleavage stimulation factor subunit 1
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    4334149
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4334149
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     4334149
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 WD40 Beta-prop_WDR3_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WDR55 WD40_MABP1-WDR62_2nd WD40_Gbeta Beta-prop_TEP1_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_EML ANAPC4_WD40 NBCH_WD40 Beta-prop_Aladin WD40_RFWD3 Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_IFT122_1st Cytochrom_D1 Ge1_WD40 Beta-prop_NOL10_N Beta-prop_WDR19_1st Beta-prop_Nup120_160 Beta-prop_SCAP Beta-prop_HPS5
Other DBs
NCBI-GeneID: 4334149
NCBI-ProteinID: XP_015630492
UniProt: Q9FNU4 Q75J06
LinkDB
Position
3:join(32105010..32105201,32105327..32105445,32105555..32105624,32105891..32105974,32106071..32106157,32106244..32106314,32106461..32106512,32106620..32106677,32108822..32108916,32109016..32109170,32109248..32109356,32109574..32109630,32109726..32109881)
AA seq 434 aa
MDAAVQEAKLLRQVNALIVAHLRDHNLTQAAAAVAAATMTPLAPPEPDGDDSVPANQLLR
LVAKGLAVEREETGRGGGAFDSAAAAAGYGGLLPPLGTNAVDFSTQDVKGSSKSFPKHEA
RHVSDHKNVVRCAKFSPDGKYFASGSGDTSIKFFEVAKIKQMMLGDSKDGPVRPVIRTFY
DHTQPINDLDFHPESPILISAAKDNTIRFFDFSKTVARKAFRVIQDTHNVRSVCFHPCGD
YLLAGTDHPVAHLYDINTFTCYLSANSHDSNAAINQVRYSSTGSLYVTASKDGSLRIWDG
ISAECVRPIIGAHASAEVTSAIFTKDERYVLSCGKDSCIKLWEVGSGRLVKQYVGAVHRQ
FRCQAVFNQTEEFVVSTDEQNSEVVVWDALTAENVARLPSGHTGAPRWLGHSPAEPAFVT
CGNDRSVRFWKQTV
NT seq 1305 nt   +upstreamnt  +downstreamnt
atggacgcggcggtgcaggaggcgaagctgctgcgccaggtgaacgccctcatcgtggcg
cacctccgcgaccacaacctcacgcaggctgccgccgccgtcgccgccgccaccatgacg
cccctcgccccgcccgagcccgacggcgacgactccgtccccgccaaccagctcctccgc
ctcgtcgccaagggcctcgcggtggagcgggaggagacggggaggggaggaggggcgttc
gactctgccgccgccgccgctggatacggtggattgttgccgccgctcggcaccaatgcc
gtggatttcagcacgcaggatgttaagggctcatccaagagcttccccaagcacgaggcc
aggcacgtatctgatcacaagaatgttgtccgatgtgcaaaatttagtcctgatgggaaa
tattttgcatccgggagtggtgacacatcaattaagttcttcgaggttgctaaaataaag
cagatgatgctaggggattccaaagatggccctgtccgtcctgtgatccgtactttttac
gatcacacgcagcccatcaatgatcttgattttcatcctgagagccccatactgatatct
gcagcaaaagacaatacaataaggttcttcgacttctcaaaaactgttgcaaggaaagca
ttcagagttattcaggacactcacaatgttagatccgtatgttttcatccttgtggggat
taccttttagcagggactgatcacccagtggctcatctatatgatattaacactttcaca
tgctacttatcggcaaattcacatgattccaatgctgccattaatcaggtccgatactct
tctactgggagcctgtatgtgactgcttccaaggatggttctctgcgcatctgggatggg
atatccgctgaatgtgtccggcccataattggagcacatgcatctgcagaggttactagt
gcaattttcacaaaagatgagaggtatgtcctatcatgtgggaaggattcttgtataaaa
ttatgggaagttggctctggacgacttgtcaagcaatatgtaggcgctgttcacagacaa
tttcgatgtcaggctgtcttcaaccaaacggaggaatttgtagtatcaaccgatgaacaa
aacagtgaggttgtcgtctgggatgcacttaccgctgaaaatgtagcaaggttgccctct
ggccacaccggtgccccgaggtggcttggccactcccctgcagaaccagcctttgttaca
tgcggtaacgatagatccgtcagattctggaaacaaaccgtgtag

DBGET integrated database retrieval system