KEGG   Oryza sativa japonica (Japanese rice): 4334389
Entry
4334389           CDS       T01015                                 
Symbol
OsJ_12910, OsRFC5, RFC5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4334389 (OsJ_12910)
   03410 Base excision repair
    4334389 (OsJ_12910)
   03420 Nucleotide excision repair
    4334389 (OsJ_12910)
   03430 Mismatch repair
    4334389 (OsJ_12910)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4334389 (OsJ_12910)
   03036 Chromosome and associated proteins [BR:osa03036]
    4334389 (OsJ_12910)
   03400 DNA repair and recombination proteins [BR:osa03400]
    4334389 (OsJ_12910)
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    4334389 (OsJ_12910)
  DNA Replication Termination Factors
   ELG1-RFC complex
    4334389 (OsJ_12910)
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    4334389 (OsJ_12910)
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     4334389 (OsJ_12910)
  Check point factors
   HRAD17(Rad24)-RFC complex
    4334389 (OsJ_12910)
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 Sigma54_activ_2 DUF815 RuvB_N AAA_lid_RFC1 AAA_22 AAA_5 ABC_tran Mg_chelatase AAA_2 AAA_16 RsgA_GTPase nSTAND6 AAA_29 nSTAND3 FtsK_SpoIIIE nSTAND1 TsaE AAA_24 ATPase_2 NB-ARC RNA_helicase MobB
Other DBs
NCBI-GeneID: 4334389
NCBI-ProteinID: NP_001389222
LinkDB
Position
3:complement(join(33936501..33936559,33936670..33936715,33936956..33937030,33937115..33937184,33937358..33937456,33937575..33937711,33938110..33938291,33938384..33938552,33938894..33938926,33939028..33939138,33939254..33939337))
AA seq 354 aa
MLWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG
AGADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN
RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR
CLNVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQY
PFTSNQVAPPLDWEQYVSEIAADIMKEQSPKRLFAVRQKFYELLVNCIPPESILKKLLAE
LLKKLDSDLKHEICHWAAHYEHKMRLGSKAIFHLEAFVAKFMSIYKEFLVSTFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgctgtgggtggacaagtacaggccgaaaaccctagacaaggtcaccgtccatgaccag
gtcgcgcaaaacctcaagaagctggtggcggagcaggattgcccgcacctgctcttctat
gggccgtcggggtccgggaagaaaaccctagtcatggccctcatcaagcagatgttcggc
gcaggcgcggataaggtgaagatggagaacaagacatggaagatcgatactgggtcgagg
aatattgagatagaactggcaatgttgtcgagcgcccaccatgtggagatgaaccccagc
gatgctgggtttcaggacaggtatgttgttcaggaagtcattaaagagatggcgaagaat
aggccaattgatgccaagggcaagagagcatttaaagtccttgtccttaatgaagtcgac
aagctctcacgagaagcccagcattcccttcgtaggacaatggagaagtacagtgcatca
tgcaggctgatattgtgctgtaatagctcatcaaaggtgacagaggctgtaaggtctcgt
tgcttgaacgtgcgagtgaatgcacccagtgaagaccagatcgtccaagttctggagttc
attgggaagaaagaaaatctgcagcttccatttggatttgctgctaggatagcagcacaa
tcgaaccgtaacctgagacgagcgatactgttttttgagacctgcaaagtccagcaatac
ccatttacatcaaatcaagtagcacctcctcttgactgggagcaatatgtgtcagaaata
gcagctgatatcatgaaagaacaaagccctaaaaggctatttgctgtgcgccagaagttc
tacgaattacttgtgaattgtatcccacctgaaagcatcttaaagaagttgttggcggag
ttactgaagaaattagactctgacttgaaacatgaaatttgtcactgggctgcacactat
gaacacaagatgcgtcttgggtccaaggccatttttcacctagaagctttcgtcgccaag
ttcatgagcatctacaaggaatttcttgtctctacatttggctga

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