KEGG   Oryza sativa japonica (Japanese rice): 4334459
Entry
4334459           CDS       T01015                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 35B
  KO
K18468  vacuolar protein sorting-associated protein 35
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    4334459
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:osa04131]
    4334459
Membrane trafficking [BR:osa04131]
 Endosome - Lysosome transport
  Rab GTPases and associated proteins
   Retromer subcomplex
    4334459
SSDB
Motif
Pfam: Vps35
Other DBs
NCBI-GeneID: 4334459
NCBI-ProteinID: NP_001405768
LinkDB
Position
3:join(34397717..34397812,34397898..34397994,34398090..34398216,34398965..34399150,34399714..34399801,34400040..34400096,34400183..34400272,34400351..34400473,34401036..34401110,34401181..34401240,34401476..34401592,34401866..34402105,34402193..34402258,34402382..34402471,34402926..34403015,34403321..34403410,34403714..34403782,34403853..34403933,34404120..34404227,34404348..34404451,34404834..34404947,34405030..34405243)
AA seq 793 aa
MLPDGGADDEERWLAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHK
YYDLYMRAFDEMRKLEMFFREETRRGSCSVVDLYELVQHAGNVLPRLYLLCTVGSVYIKS
KEAPAKDVLKDLVEMCRGIQHPLRGLFLRSYLSQISRDKLPDIGSEYEGDADSINVAVEF
VLQNFIEMNKLWVRMQHQGPVREKEKRGKERNELRDLVGKNLHVLSQIEGVDLDMYKETV
LPRILEQVVNCKDELAQFYLMDCIIQVFPDEYHLQTLETLLSAFPQLQPNVDIKTVLSQL
MDRLSSYAAASPEVLPEFLQVEAFAKFSNAIGKVIEAQVDMPVVGAVTLYVSLLTFTLRV
HPDRLDYVDQVLGACVKKLSGNAKLEDSRATKQIVALLSAPLEKYSNIVTALELSNYPRV
MDYLDNSTTKVMALVIIQSIMKNTTCISTSDKIEALFDLIKGLIKDMDGAQNDELDDEDF
KEEQNSVARLIHMLHNDDHEEMLKILCTVQKHILQGGPKRLPFTVPSLVFSALKLVRRLQ
GQDGDVIGEEVPATPKKIFQILHQTIEALSCVPSPELALRLYLQCAEAANDCDLEPVAYE
FFTQAFILYEEEIADSKAQITAIHLIIGTLQRMNIFGVENRDTLTHKTTGYSAKLLKKPD
QCRAVYACSHLFWTDDQDGIMDGERVLLCLKRALRIANAAQQMANVTRGSSGSVALFIEI
LNKYLYFFEKGIPEITNTVIQDLIELIRTEKQSENTVADPSTEAFFASTLRYIEFQKQKG
GSIGEKYEQIKTT
NT seq 2382 nt   +upstreamnt  +downstreamnt
atgctgccggatggcggcgccgacgacgaggagcggtggctcgccgagggcatcgccggc
gtccagcagaacgccttctacatgcaccgcgccctcgattcgaacaacctcaaggatgcg
ctcaagtactcggcgcagatgctctccgagctgcggacctcgcggctctcgccgcacaag
tattatgatctatatatgagggcgtttgatgagatgcggaagctggagatgttcttcagg
gaggagacccgtcgtggcagctgctccgttgttgatttgtatgagcttgtgcagcatgct
ggcaacgtactgcccagactctatctcctctgcacagtaggatctgtgtacattaaatca
aaagaggctcctgcgaaagacgttcttaaagaccttgttgaaatgtgtcgaggcatccaa
catcctcttcgtgggcttttcctaagaagctacctatctcagataagccgagacaaactg
ccagatattggttccgagtatgaaggggatgctgacagcattaacgtcgcagttgagttt
gttcttcagaatttcatagaaatgaacaaactctgggtccgaatgcaacatcagggccct
gttcgagagaaggagaagcggggaaaagaaagaaatgaactgcgtgatttggtaggcaaa
aaccttcacgttctaagccagattgagggtgttgaccttgacatgtacaaagaaactgtc
cttccaaggatattagaacaggtggttaattgtaaggatgaacttgcacaattctacctg
atggactgcataatacaagtctttccagacgaataccatttacagacattggaaacattg
ttgagcgcatttccgcaactacagccaaatgttgatatcaaaaccgtgctgtctcaactc
atggacaggttatcaagctatgctgccgcaagtcctgaagtattgccagaattcttgcaa
gttgaagcttttgcaaagttcagcaatgctattggaaaggtgatagaggcccaagttgac
atgccagttgttggtgcagtaactttatatgtatcacttttgacatttactctccgtgtg
catccggatcggcttgattatgttgatcaagtgttgggtgcatgcgtaaagaaactttca
gggaatgcaaaacttgaagatagcagggcaacaaagcaaattgttgcacttctcagtgcc
cccctggagaaatatagcaatattgttactgcattagagctctcaaactatcctcgggtt
atggattaccttgataattctacaacaaaagttatggctcttgtaataattcaaagcata
atgaagaacacgacttgcatatctacttctgacaagattgaagctctttttgatttaatt
aaaggtcttataaaagatatggatggggctcaaaatgatgagcttgatgatgaggatttt
aaggaggaacagaattctgtggcgcgtcttattcacatgttgcacaatgatgaccatgaa
gagatgttgaagatattatgcaccgttcagaagcatatacttcagggaggtcccaagcgg
ctacctttcactgtgccatccttagtattctctgctctcaagttggtccgaagattacaa
ggtcaagatggtgatgtaataggggaggaagttcctgcaacgcctaagaaaatatttcag
atcttgcatcagaccattgaagctctctcatgtgttccttctcctgaactggctctcaga
ttatatctgcagtgtgcagaggcggccaatgattgtgatctggaaccggttgcttatgag
ttctttactcaagcattcatcttatatgaagaagaaattgcggattcaaaggctcaaatc
actgcaattcatcttataattggaacccttcaacggatgaatatattcggggttgaaaat
agagataccctgactcacaagacaacagggtactcagcaaaacttctaaagaaacctgac
caatgccgagcggtttatgcatgttcacaccttttctggactgacgaccaagacggaata
atggatggtgaaagggtcctcctttgtttaaagcgtgccttaagaattgcaaatgccgct
caacagatggctaatgtaacaaggggaagtagcggatctgtcgcgctatttatcgaaatt
ttgaacaagtatttgtacttcttcgagaaaggaattccagagatcacgaacactgtaatc
caggatttgattgaattgattaggacagagaagcaaagtgagaacactgtagctgatcca
tcgacagaggccttctttgcaagcactttacgttacattgaattccagaagcagaaaggt
gggagcataggtgaaaaatatgagcaaataaaaactacctga

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