Oryza sativa japonica (Japanese rice): 4334493
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Entry
4334493 CDS
T01015
Symbol
OsJ_13017, OsPL10a, PL10A
Name
(RefSeq) dEAD-box ATP-dependent RNA helicase 37
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4334493 (OsJ_13017)
03041 Spliceosome [BR:
osa03041
]
4334493 (OsJ_13017)
03036 Chromosome and associated proteins [BR:
osa03036
]
4334493 (OsJ_13017)
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
4334493 (OsJ_13017)
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
4334493 (OsJ_13017)
mRNA cycle factors
Common to processing body (P body) and stress granule
4334493 (OsJ_13017)
Spliceosome [BR:
osa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
4334493 (OsJ_13017)
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
4334493 (OsJ_13017)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
4334493
NCBI-ProteinID:
NP_001405775
LinkDB
All DBs
Position
3:complement(join(34585513..34586016,34586561..34586674,34586853..34587020,34587396..34587638,34588239..34588322,34588414..34589214))
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AA seq
637 aa
AA seq
DB search
MRSSWADSVANAEESAPATGAAPTPVANHQNSRPTRSAYVPPHLRGQAPTTTAAPAPAPG
PAAVQPSASVQPSGYAAIVGGSRWAGPASGDGTGAVGGPRQSVGGRGGGGGGGGGWNSRP
GWDRRDREPNPFANSEAEEATEVDFDTANTGINFDAYEDIPVETSGHDVPPPVNTFAEID
LGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMSSR
PPQRPRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPIHQQLRELE
RGVEILVATPGRLMDLLERARVSLQMVKYLALDEADRMLDMGFEPQIRKIVEQMDMPPRG
VRQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIAQRVEFVLEADKRSYLMDL
LHAQKANGTHGKQALTLVFVETKRGADALENWLYTNGFPATSIHGDRTQQEREYALRSFK
SGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEG
NLSLARPLCELMQEANQEVPQWLERYSARSSFGGGGGRNRRSGGARFGGRDFRRDNRGGG
GGGYGGGGGGYGGGGYGGGGGYGGGYGGGQGSTSSWD
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgcgatcttcatgggctgattcagttgcgaacgccgaggaatcggcgcccgcgactggt
gctgctcccacccctgttgctaatcaccagaactcacgccccactcgcagcgcatacgtg
cctcctcacctccgtggccaggcaccaaccacaactgcagctccagctccagctccagga
ccagctgctgtccagccctcagcttctgtacagccttctggttacgcagctattgttggt
ggctctcgctgggctggccctgccagtggtgatggtactggcgctgtaggtggcccacgc
cagagcgttggtggtcgtggtgggggtgggggtgggggtgggggttggaactcccgccct
gggtgggaccggagagaccgtgaacctaacccttttgccaatagcgaggcagaggaagcc
acagaggttgattttgatacggcaaacactggcatcaactttgatgcctatgaggacatt
cctgtggaaacaagtggccatgatgtgccaccgccagtcaatactttcgcagagattgat
ttgggtgatgcgctgaatgagaacatacggaggtgcaaatatgtgaaacctacgccagtg
cagcggtatgccattccaatctccattgcagggcgggatctcatggcttgtgctcagaca
gggtctggaaagacagccgccttttgtttccctatcattagtgggattatgagctctagg
ccaccacagaggccaaggggatcgaggactgcataccctcttgcattgattttatccccc
actcgcgaattatcagtccaaattcatgaagaagcaaggaaattcgcataccagactggt
gttagggtggttgttgcgtatggtggagcaccaatacatcaacagttgagggaattggaa
aggggcgttgaaatccttgtggcaactcctggtcggttgatggatctgctggagagggct
agagtatcactgcaaatggtgaagtacttagctcttgatgaagctgatcgaatgcttgac
atggggttcgagccgcaaattcgtaaaattgttgagcagatggacatgccccctcgcggt
gtgaggcagacaatgttgtttagtgctacttttccaaaagaaatacagcgcatggcttca
gatttccttgcggactacatcttccttgctgtaggaagagttggttcaagtactgacttg
attgctcaaagggtagagtttgtccttgaagcggataaaagaagttacctcatggatctc
ctccatgcccaaaaagcgaatggtactcatgggaagcaagcgcttactctggtctttgtg
gagacaaagaggggagctgatgctttggagaactggctttacacaaacgggttccctgca
acaagtattcatggcgaccgaacacaacaggaaagagagtacgcgcttagatcattcaag
agtggagcaacacccatccttgttgcgactgatgtagctgcccgtggacttgacatacct
catgttgcccatgtcatcaattttgacctcccaaatgacatagatgactatgttcatcgt
atcggacgaacaggacgagcagggaagtctggcttggcaactgcatttttcaacgagggc
aatctatccctggcgaggccgttatgtgagctaatgcaggaagcaaaccaggaggttcct
caatggcttgaacgatactcggcccgttcttcgttcggaggtggtggtggcagaaaccgc
cgatcaggcggtgcccgttttggtggccgtgacttccgccgcgacaataggggtggaggc
ggcggcggttatggtggtggcggtggtggctatggaggcggcggttatggagggggcggt
ggatatggcggtggctatggtggtggtcaaggctcaactagttcgtgggactga
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