Oryza sativa japonica (Japanese rice): 4334928
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Entry
4334928 CDS
T01015
Name
(RefSeq) SWI/SNF complex subunit SWI3D isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
4334928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4334928
03036 Chromosome and associated proteins [BR:
osa03036
]
4334928
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
4334928
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
4334928
PBAF complex
4334928
GBAF(ncBAF) complex
4334928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Motif
Other DBs
NCBI-GeneID:
4334928
NCBI-ProteinID:
XP_015633469
UniProt:
A0A0P0W607
B9FD22
LinkDB
All DBs
Position
4:join(606227..606566,608022..608563,609680..610369,610460..610626,610709..611238,611983..612146,612289..612516)
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AA seq
886 aa
AA seq
DB search
MEPNPPPPPAAATATYRRRGKPKPKPKRKAAKPPSPSPPPKRQARDDPPHTGPLTRHSPL
NPAPEDAPPQLHAGERDPPPRAWIEPAKLPPVSEEVQAVLSRGAGVHVVPSFAGWFSWKE
IHQIEKQALPSFFDGISLRRTPEIYLGIRNFIMKKFHSNPQMHLELKDLSELSDGEMDAQ
LKVLEFLSHWGLINFHPFPPAVQGVSELVESITNADTEEKISVVDKLFQFETLQSYLIPA
PNQAEVTAPIHTPSLLSEPTLTEDSITQAESSVEYHCNSCSVDCSRKRYHCRTQADFDLC
CDCYDKGNLDAGMSQTDFIIMESAEIPGFGGTSWTDQETLLLLEALEIFQAKWGDIAEHV
ATKSKAQCMLHFLKMPIMDPFLHDGDVNEISQETAEQVSAEQGTSRVTEKMEVEDKTKEI
KTNDRKTAAKPKLNLTETEVNLDDNVVANNDTKSSGDINVDVCSNTGVSNRSSDTEPTKK
ETSGENTSNIVNDVLKYAFEAVGHIPKIEGLGSFTEAGNPVMALVAFLSGLVDHDDVTTL
CCSSLKAISDMSPALQLATMHCFILQDPPNDLKDPPVSISFANTDCGQQKDKDATSNPSV
TDNDDNLKEESALSVEEPNTTSTSSKNTRKLSNAKESKDESPQVEPKPSSANDCDNPISQ
VAKRASDNIRGHSSTVLPVSLNNTNEPCSISSQEASAGNTKDTSHTEHIEGDKPIYEDPP
LEGKVELNKIEHEVTDLSAVQQHESIQTSLKKGYIQDHNSIKKTVADDVSVQRLQRAAAS
AISAAAVKSKLLAKHEEYQIQRLAALVIDKQLHKMQAKMSVFTEADNLVLRAREHTERTR
KKLLMERSAIIASRMAALPPRPNHQPGMPGSRLPVGYGVNQHLRRS
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggagcccaatcccccgccgccgcccgccgccgccaccgcaacctaccgccgccgcggc
aagcccaagcccaaacccaagcgcaaggcagccaagcccccctcgccgtccccgccgccc
aagcgccaggcccgggacgaccccccgcacacggggccactcacccgccactcgccgctc
aaccctgcgccggaggatgcaccgccccagctccacgccggggagcgcgacccgcctccg
cgcgcctggatagagcccgcaaagcttccgccggtgagcgaggaagtccaggccgtcctg
tcgcgcggagccggcgtccacgtcgtcccctccttcgcaggatggttttcatggaaggaa
atccaccaaattgaaaagcaagcattgccttcgttttttgatgggatatctttacggagg
acacctgagatatatttgggaattagaaattttattatgaagaaatttcattctaatcct
caaatgcatttggagttgaaggatttgtctgagttgtcagatggggagatggatgctcag
ttgaaagtcttggagttcttgtcacactggggtttgatcaatttccacccttttccacca
gctgtacagggggtgagtgagctggttgagagcataacaaatgctgatacagaagagaaa
atttctgtagtggataaattatttcagtttgaaacattgcagtcatatctcattcctgct
cctaaccaagcagaggtgacagctccgattcacaccccgagcttgctttctgagcctact
ctaactgaagattcgattacccaagctgagtcttctgttgagtaccactgcaactcttgc
tcagttgattgctcaaggaagcgctaccattgcagaactcaggcagactttgacttgtgt
tgtgactgttatgacaaaggaaatttggatgcaggcatgtcacaaactgatttcatcatt
atggaatctgcagaaattccaggctttggtggtactagctggactgaccaggagaccttg
cttcttttggaagctttagaaattttccaagcaaaatggggtgacattgccgagcatgtt
gctacaaaaagcaaagcacaatgcatgctacacttccttaaaatgccaattatggaccca
tttctgcatgatggagatgttaatgaaatatctcaggaaactgcagagcaggtctcagca
gaacaaggtacttctcgtgtaactgagaaaatggaagtagaagacaaaacaaaagaaata
aaaactaatgatagaaaaactgctgcaaaaccaaaattgaacttgacagaaacagaagta
aacctagacgacaatgttgttgcaaataatgataccaagagttcaggtgatatcaatgtg
gatgtatgtagcaatactggtgtatcaaatagatcttcagataccgaacctacaaagaag
gaaacttctggggaaaacacatcaaacattgttaatgatgtcctgaaatatgcttttgag
gctgttggtcacattccaaagatagagggcttgggttcatttactgaagcaggaaatcct
gtcatggcactggtggcatttctatctggccttgtggatcatgacgatgttactacgttg
tgctgtagttcactgaaagctatatctgatatgtctcctgctcttcaactggcaacaatg
cattgttttattcttcaggatccaccaaatgacctcaaagatccaccggtcagtataagc
tttgcaaacacagattgtgggcaacaaaaagacaaggatgctacttcaaatccaagtgtt
actgacaatgatgacaatttaaaagaagagtctgctttatctgtggaagagccaaatacc
acatccacatcatcgaaaaacaccaggaaattatctaatgcgaaggaatctaaggatgaa
tctccccaagtggagcccaaacccagtagtgccaacgattgtgacaatccaatttctcag
gtggcaaagagggcttctgataatataagaggacacagttccactgtgcttcctgtcagt
ctgaataatacaaatgaaccttgttccatatcttcccaagaggctagtgcaggaaacaca
aaggatacaagtcatacagaacacatagaaggagataaaccaatttatgaggatccacca
ttagaaggaaaggtagagttgaacaagatcgaacatgaagtcactgacttatctgctgta
cagcaacatgagtccatccaaacaagtttgaagaagggctacatacaagatcataacagt
attaagaaaacagttgccgatgatgtctccgtacaaaggctacagcgggcagcagccagt
gctatttcagcagctgctgtgaagtcgaaactccttgcaaagcatgaggaatatcaaatc
cagcgactagctgcacttgtgattgataaacagctccacaagatgcaagcgaaaatgtca
gttttcactgaagcagataatttggtcctgcgagcgagagaacacaccgagagaactcgg
aagaagcttctgatggagaggagcgcgataatcgcttctcggatggcggcattgccaccc
agaccaaaccaccaacctgggatgcctgggagcagattgccggtagggtatggtgtgaat
cagcatctgaggcgatcttga
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