KEGG   Oryza sativa japonica (Japanese rice): 4334955
Entry
4334955           CDS       T01015                                 
Name
(RefSeq) tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
  KO
K05544  tRNA-dihydrouridine synthase 3 [EC:1.3.1.89]
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:osa03016]
    4334955
Enzymes [BR:osa01000]
 1. Oxidoreductases
  1.3  Acting on the CH-CH group of donors
   1.3.1  With NAD+ or NADP+ as acceptor
    1.3.1.89  tRNA-dihydrouridine47 synthase [NAD(P)+]
     4334955
Transfer RNA biogenesis [BR:osa03016]
 Eukaryotic type
  tRNA modification factors
   Dihydorouridine synthases
    4334955
SSDB
Motif
Pfam: Dus zf-CCCH_DUS3L zf-CCCH_4 zf-CCCH zf_CCCH_4 DEAD_2 zf-CCCH_2 zf-CCCH_PARP12 zf-CCCH_PAN3
Other DBs
NCBI-GeneID: 4334955
NCBI-ProteinID: XP_015635918
LinkDB
Position
4:join(1130195..1130446,1131100..1131216,1131290..1131520,1134338..1134593,1134689..1134945,1135116..1135388,1135755..1136036,1136183..1136303,1136489..1136658,1136751..1136849)
AA seq 685 aa
MAATAAAAAAAPPADPPDSSPAASSPPRPSPEELVARAVAPVKPAFLRPPPVRDAPKDEG
KANGGGAVVAEKKSKRQLKRERKQEQKSSSHLCIEVGKSGNVSSCKYGDSCRFSHDIDAY
LAQKPADLEGTCPFTNLDQLCPYGLTCRFLGTHKDIHAASGNLSEKHEINALNKDIQKLL
WKNKYKFPKASAQIKLLGLKEVIKSKPDAANDDKKVNHDNLDGNDDENKEPLCNPPVNAE
CDSTLCEELDRSEGEPLIDNSIPCVEPRPTKKSKVESDEIDKHGAGTLNTNTESEDPNLS
NGLEPSNNSSSCRTDLITTPHLREKKIIDFREKLYLAPLTTVGNLPFRRLCKTLGADITC
GEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELVDNECSVDFIDIN
MGCPIDIVVNKGAGSSLLTKPMRIKSIVQAASTVTEKPLTVKVRTAFFEGRNRADSIVSD
IYDWGASAITVHGRSRQQRYSKLADWDYIYQCAQKAPDQLHVVGNGDVFSFTDWNKHVSG
CSKISTSMIARGALIKPWIFTEVKEQRHWDITSGERFNILKDFVSFGLEHWGSDSKGVET
TRYFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPSYCGRDDLETLMISDSAADWIRISEML
LGKVPEGFTFTPKHKSNAYDRAENG
NT seq 2058 nt   +upstreamnt  +downstreamnt
atggccgccaccgccgccgccgccgccgcggcgcctcccgccgacccgccggactcctcc
ccggccgcttcctcccctccgaggcccagcccggaggagctggtcgcccgtgcagtggcc
cccgtcaagcccgccttcctccgcccgccccctgtccgcgacgcccccaaggatgagggc
aaggccaacggcggcggcgcggtggtcgcggagaagaagtccaagcgccagctcaagcgc
gagcgcaagcaggaacagaaatcttcatcacatctttgtatcgaagtagggaaaagtgga
aatgtgagctcttgcaaatatggtgattcttgccgtttcagccatgacatagatgcctat
ttggctcagaaaccagctgaccttgagggcacgtgcccatttaccaatctggaccagttg
tgtccatatggactaacttgtcgatttttgggtacacataaggacatccatgcagcttct
ggaaatctttcagagaaacatgagataaatgctttaaacaaagacattcaaaagctctta
tggaagaacaaatataagttccccaaggccagtgcacagatcaagcttcttggtcttaag
gaagtcattaagagcaaaccggatgctgcaaatgatgataagaaggttaatcatgataat
ctagacgggaatgatgatgaaaataaagaacctctttgcaatcctcctgtaaatgcggaa
tgtgattctactttgtgtgaagaattggatagatcagagggagaacctttgattgataac
tcaattccatgtgttgaaccaaggccaacaaagaagtcaaaggttgaaagtgatgaaatt
gacaaacatggagcgggtactctcaacactaacacagaatctgaagatcctaatttgagt
aatggattggaaccctcaaataactcaagttcttgtagaactgacctaatcacaacacct
catttacgtgaaaagaagataatagattttcgggagaagttgtaccttgctcccttgact
actgtcgggaatctgccttttcggagactctgcaaaaccttgggagctgatattacttgt
ggagaaatggccatgtgcacaaatcttttacagggacaagcttcagagtgggctttgctg
cgacggcattcatcagaggatttgtttggggtgcaaatttgtggagcctatccagataca
gtagcacgaaccgttgaacttgtggataacgaatgttcagttgatttcatagacataaat
atggggtgcccaattgatattgttgtcaacaaaggtgctggatcatcattgctaacaaaa
cctatgaggatcaaaagtattgtacaagcagcatccactgttactgaaaaacctttaact
gttaaggtaagaactgctttctttgagggaaggaaccgtgctgattctatagtttccgac
atctatgactggggtgcgtcagccataacagtacatggtcgatcccggcaacagcgctac
agcaaacttgctgattgggattatatttaccagtgtgcccagaaagcccctgaccagttg
catgtcgttggaaatggtgatgtattctcttttactgactggaacaaacatgtttcaggc
tgctctaaaatatcgacaagcatgattgctcgaggtgcactcataaagccttggatattt
actgaggttaaagaacaaaggcactgggatattacatctggcgagagattcaatattctt
aaagattttgtgagttttggtctggaacactggggttccgattccaaaggtgttgaaaca
acacgctattttttactagaatggctaagctacacctgccgctacataccggttggcctg
ttggatgtgatcccgcaacgtttgaactggaggcccccaagctactgtggccgtgatgat
cttgaaaccctaatgatctctgattcagcagctgactggatcaggatctcagagatgttg
cttggcaaagttccagaagggtttacgtttacacccaagcacaaatccaatgcttatgat
cgagctgaaaacggctaa

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