Oryza sativa japonica (Japanese rice): 4335013
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Entry
4335013 CDS
T01015
Name
(RefSeq) probable pectate lyase 8 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa00040
Pentose and glucuronate interconversions
osa01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
4335013
Enzymes [BR:
osa01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
4335013
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
4335013
NCBI-ProteinID:
XP_015634113
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Position
4:join(2575158..2575282,2575456..2575545,2576572..2576670,2578124..2578766,2579140..2579243,2579420..2579558,2579674..2579895)
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AA seq
473 aa
AA seq
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MAEAAARRWAAALVLLVLLTGTVELIGGGGGSGGRRLLAGLRAGSTAAASGTRRWLRDSS
WPATAAAAAAASRGDDGDGDEASSAAMTVPGAVDDPEEVVSQVHMSIRNSTARRKLGYLS
CGTGNPIDDCWRCDPDWHKNRQRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDAVNPKKG
TLRYAVIRDEPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIANGACITIQYVTNVI
IHGLHIHDCRPTGNAMVRSSPSHYGWRTMADGDAVSIFGASHIWVDHCSLSNCADGLIDA
IMGSTAITVSNNYFTHHNEVMLLGHSDSYVKDKAMQVTIAFNHFGEGLIQRMPRCRHGYF
HVVNNDYTHWEMYAIGGSAEPTINSQGNRYLAPTNPFAKEVTKRVETAQTIWKGWNWRSE
GDLLLNGAFFTPSGAGASASYSRASSLGAKSSSMVGTITSGAGALSCRGGSAC
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcggcggcgaggaggtgggcggcggcgctggtgctgctggtgcttctcacc
ggcaccgtcgagctcatcggcggcggaggcgggagcggcgggcggcggcttctcgctggc
ctccgggccgggagcacggcggcggcgagcggcacgcggcggtggctgcgcgactcgtcc
tggccggcgacggcggcggccgcggcggcggcgagcagaggagatgacggtgatggcgat
gaggcgtcgtcggcggcgatgacggtgcccggcgcggtggacgacccggaggaggtggtc
tcgcaagtgcacatgtcgatcaggaacagcacggcgaggaggaagctgggctacctgtcg
tgcggcaccggcaatccgatcgacgactgctggaggtgcgacccggactggcacaagaat
cgccagcggctcgccgactgcggcatcggcttcggccgcaacgccatcggcggccgcgac
ggcaagatctacgtggtcaccgaccccagcgacgacgacgcggtgaaccccaagaagggc
acgctccggtacgccgtcatccgcgacgagccgctgtggatcgtcttcaagcgcgacatg
gtgatcacgctcaagcaggagctgatcatgaacagcttcaagaccatcgacggccgtggc
gccaacgtgcacatcgccaatggcgcctgcatcaccatccagtacgtcaccaacgtcatc
atccatggcctgcacatccatgactgcaggcccaccggcaatgccatggtccggagctcg
cccagccactacgggtggcgcaccatggccgacggcgacgccgtctccatcttcggcgcc
agccacatctgggttgaccattgctcgctctccaactgcgccgacggcctcatcgacgcc
atcatgggttccactgcaatcacagtgtccaacaactacttcacccaccacaatgaggtg
atgctcctgggtcacagcgattcctatgtcaaggacaaggcaatgcaggtcacgatagca
ttcaaccatttcggagaaggtcttattcagagaatgccaaggtgcaggcatggttacttc
catgtggtgaacaatgactacacccactgggagatgtacgcaattggtggaagtgctgag
ccaaccatcaacagccagggcaaccgctaccttgctccgacaaatccctttgccaaggag
gttacaaagagggttgagactgctcagaccatctggaagggctggaactggagatcagag
ggggatctcctcctgaacggcgccttcttcaccccatcaggtgcaggcgcctcggccagc
tactcgcgcgcctcaagcctcggtgccaagtcatcatccatggttggcaccatcacatcc
ggtgcgggcgccttgtcgtgccgcgggggctcagcctgctag
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