KEGG   Oryza sativa japonica (Japanese rice): 4335086
Entry
4335086           CDS       T01015                                 
Name
(RefSeq) DNA repair protein RAD5B
  KO
K15505  DNA repair protein RAD5 [EC:5.6.2.-]
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:osa03400]
    4335086
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    4335086
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C HIRAN zf-C3HC4_3 zf-C3HC4 zf-RING_UBOX zf-RING_2 UBA_RAD5A zf-C3HC4_2 zf-RING_5 DEAD ResIII RING_XB3-XBAT31 zf-C3HC4_4 Prok-RING_4 zf-RING_4 UBA
Other DBs
NCBI-GeneID: 4335086
NCBI-ProteinID: XP_015634613
UniProt: Q7XNH0
LinkDB
Position
4:complement(join(5347349..5347471,5347562..5347660,5347771..5347842,5347943..5348516,5348600..5348712,5348867..5348966,5349084..5349206,5349293..5349360,5349486..5349635,5349740..5349883,5350122..5350313,5350735..5350819,5350917..5351068,5351163..5351321,5351577..5351630,5351723..5351861,5351980..5352113,5352225..5353142))
AA seq 1132 aa
MHGDWPESPSQEVLYADEIAAVRAVLGAGLPEARVVAAISRCGGNAERAINALLDDATAG
VEDKPEPKKGKGAKTAAPPVKAERDAGGAAPKPPPPPVKVEVLDDEPLGSQESNGCSARV
KKEREDELLVKAPPPMPDRVKEEDGVAAKRGAATANAAGISLVPRPKKRSRVHDEADTID
LTATHPVPYLNPRPIRAVPPPEAMEMLESRRVRARPPPPSSDLRMVVAPPDAEFGEFPEE
RDWFLVGRSYVTGLSTNRGRRRLDAGELVHFSFPSLERTYGGIKVSNKKAAALAEIVRFS
TNRAGEIGKLSTEWTKCLVPLVSSSKVKIQGKIVFPTVELRLMQEILLYVSFYIHRSVFT
ASGNNSSWDLLAPANVDYSTNPLYRLFRLLKLRAFTKADITPEELAAGKRPRNLRGDDND
EDEPMAIVGLENRRTAGQTFPEQGTDEQAISEAALNKIVGTAETYDLEEAEPPSTLVSVL
KPYQKEALFWMSQLEKGIDGDQAKKTLHPCWSAYKIVDKRAPAVYVNVFTGEATTQFQSV
TQSARGGILADAMGLGKTVMTIALILSNPRGELEQDKRGTRDRDTKAQTSRSSVRGGTLI
ICPMALLGQWKDELEAHSTPGALSVFVYYGGDRTTDLRFMAQHSVVLTTYGVLQSAHKND
GSSIFHRIDWYRVVLDEAHTIKSPRTKAARAAYELTSHCRWCLTGTPLQNNLEDLFSLLC
FLHVEPWGDASWWNKLIQRPYENGDERGLKLVRAILRPLMLRRTKETKDKMGNPILVLPP
ANIEIVECEQSEDERDFYEALFRRSKVQFDKFVAQGSVLNNYANILELLLRLRQCCDHPF
LVISRADTQKYTDLDELAQRFLDGVQRDSARRSAPPSQAYVEEVVEEIRQGATTECPICL
ESASDDPVLTPCAHRMCRECLLSSWRTPSGGPCPLCRSPITKSELITLPSQCRFQVDPEN
NWKDSCKVIKLIKILEGLQEKREKSIVFSQFTSFFDLLEVPFNQKGIKFLRFDGKLSQKH
REKVLKEFSESKDKLVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQ
KRAVQVRRFIVKDTVEERMQKVQACKQRMISGALTDDEVRSARIEQLKMLFT
NT seq 3399 nt   +upstreamnt  +downstreamnt
atgcacggcgactggccggagtcgccgtcccaggaggtgctctacgccgacgagatcgcc
gccgtccgcgcggttcttggcgcgggcctccccgaggcccgcgtcgtcgccgcaatctcc
cgctgcggaggcaacgccgagcgcgccatcaacgcgctcctcgatgacgccaccgccggc
gtcgaggacaaacccgagcccaagaagggtaaaggtgccaagacggctgctcctccggtg
aaggcggaacgcgacgctggtggcgccgccccgaagccgccgccgcctccggtgaaggtt
gaggtcctcgacgacgagcccctggggagccaagaatcgaacggctgctccgcgagggtc
aagaaggagcgggaggacgagctgctcgtcaaagcgccgcctccgatgccggatcgggtc
aaggaggaagacggcgtcgcggccaagcgaggcgcggcgacggcgaacgccgccggcata
agcctggtgccgaggccgaagaagaggtctcgcgtgcacgacgaggcggacaccatcgac
ctcacggcgacccacccggtgccgtacctgaacccgaggccgatccgggcggtgccgcca
ccggaggccatggagatgctcgagtcgcggcgtgtgcgtgccaggccgcctccgccgtcg
agtgatctgaggatggtggtggcgccgcctgatgccgagttcggcgagttccccgaggag
cgcgactggttcctcgtcggcaggtcgtacgtcaccggcctgtccaccaaccgcgggagg
cggaggctggacgccggcgagctcgtccatttctcgttcccctcattggagaggacctat
ggtgggatcaaggtgtcgaacaagaaggcggctgctttggcggagatcgtgcgcttctcc
accaatcgagctggagagattgggaagctatctacagaatggaccaagtgcctcgtgcca
ctggtaagctcatccaaggtgaagattcaggggaagattgtgtttcccacggtggaattg
agattgatgcaggagattttgttgtatgttagcttctacatccaccgttctgtattcacc
gcaagcggcaacaactcatcatgggacctgcttgctcctgcaaatgttgattattccact
aaccctctttacaggctgttcagattgctcaagctaagggcattcaccaaggctgatatc
actcctgaggagcttgctgcaggaaagagaccgcggaatctaaggggtgatgacaatgat
gaagatgaacccatggctatagttggattggaaaaccgacgcacagctggccaaacattt
cctgagcaaggcactgatgagcaagctatttcagaggctgcattaaacaaaattgttggc
actgctgaaacatatgacttggaggaagcagagcccccaagcactcttgtctccgttcta
aaaccataccagaaggaagctctgttctggatgtctcaattggagaagggtattgatggt
gatcaagccaaaaaaacccttcatccctgttggagtgcctacaaaatcgtcgacaagaga
gctcctgcagtgtatgtcaatgttttcactggcgaggcaacaacccagtttcaaagtgta
actcagtcagcaagaggagggatactagcggatgcaatgggtcttggtaaaactgtcatg
actattgctctaatactatcaaacccaaggggggagttagaacaagataagaggggtact
agagatcgtgacaccaaggcacaaacttcgagatcctctgtaagaggaggcacacttata
atctgtccaatggcattgctaggccagtggaaggatgaattggaggcacattcaacacca
ggagctctttctgtgtttgtctactatggtggcgacagaaccactgacctgagattcatg
gctcagcatagtgttgtcttgacaacctatggtgttcttcaatcagctcacaagaatgat
ggcagcagtatctttcacaggatagattggtatagagttgtgctcgatgaagcacatacg
atcaaatctcccagaaccaaagcagcacgagcagcttatgaattaacttctcattgcaga
tggtgccttacgggtacaccattgcagaataatttggaggaccttttcagtcttctttgc
ttcctacatgtagaaccatggggtgacgcaagttggtggaataagctgattcaaagacct
tatgagaatggtgatgagaggggattgaaacttgtcagagctattctgaggccactcatg
ctgaggagaacgaaggaaacaaaagacaaaatgggaaatcccatactagtcctcccacca
gctaatattgagattgtggagtgcgaacaatctgaagatgaacgcgatttctatgaagcg
cttttcaggagatcaaaggttcaatttgataaatttgtagcacaaggcagtgttcttaac
aactacgctaatattcttgagttactccttcggctaaggcagtgctgcgaccaccctttt
ctagtgatcagtcgagctgatactcagaagtatactgacctcgatgagctagcacagagg
ttccttgatggggtgcaacgtgattccgcgagacgcagtgcgccaccttcacaggcgtat
gtagaagaggttgttgaagaaatccgccagggcgcaactactgagtgtccaatctgcctt
gaatcagcttctgatgatccagtgctcacaccatgcgcgcaccggatgtgccgtgagtgc
ctgctctctagctggaggacgccttctggaggaccatgcccactttgccgaagccccatt
accaaatctgagctgatcacattgcctagtcagtgtcgattccaggttgaccctgagaat
aactggaaggactcatgtaaggtgataaaactcatcaagatcctggagggccttcaggag
aagagggagaagagcattgtgttcagtcagttcacttccttcttcgatcttcttgaggtt
cccttcaatcagaaagggatcaaattcttgaggtttgatgggaagctcagccagaaacac
agagaaaaggttctgaaggagttcagtgaaagcaaggacaagctggtgctacttatgtca
ctcaaggctggaggtgttggacttaatttgactgctgcctccaatgtgttcctaatggac
ccatggtggaatcctgcagtggaagaacaagctatcatgcgaattcaccgtatcgggcaa
aagagagcggtccaagtaaggcgcttcatcgtcaaggatacggtcgaggagcggatgcag
aaggtgcaagcgtgcaagcagaggatgatctctggggcgctgaccgacgatgaagtccgc
tccgctcgtatcgagcaactgaagatgctgtttacatga

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