Oryza sativa japonica (Japanese rice): 4335638
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Entry
4335638 CDS
T01015
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
4335638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4335638
03036 Chromosome and associated proteins [BR:
osa03036
]
4335638
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
4335638
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
4335638
PBAF complex
4335638
GBAF(ncBAF) complex
4335638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
YEATS
Motif
Other DBs
NCBI-GeneID:
4335638
NCBI-ProteinID:
XP_066165330
LinkDB
All DBs
Position
4:join(19090272..19091833,19091938..19092022)
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AA seq
548 aa
AA seq
DB search
MATGGNPNPNSTPTPQPRPPQPQQQGGSPATPLGHLRPPSLAGSPFQGLFHTPPQHNPAF
QIHMGAAASPQNPLMAAAAAAAAAASAKRPPQKPPARPPAPGSSSSGGGAAAAAAAAASA
AAAYKAAAAAAAVGANSAGGVDLTPAAARRNKKRKLPEKQLPDRVAALLPESALYTQLLE
FESRVDAALHRKKVDIQEALKSPPALQRTLRIYVFNTFANQAPRTIPPPKNAEPPTWSLK
IIGRVLEDGAELDPASVVPKHNPVYPKFSSFFKRVTIALDPSLYPENPLIIWENARSAAP
QEGFEVKRKGDKEFSANIRLEMNYNPEKFKLSQPLMEVLGVEVDTRSRVIAALWQYIKAK
KLQNPTDPSFFMCDPQLKKVFGEDKLRFAMLSQKISQHLSPPPPINLEHKIKLSGNGAHA
SACYDVIVDVPFPLQKEMSAFLANTEKHKDIEACDEVISASIKKIHEHRRRRAFFLGFSQ
SPVEFINALIASQSKDLKLIAGEANRNIERERRADFYNQPWVEDAVIRYLNRKPASGNEG
PGGGAGGS
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggccaccggcggcaaccccaacccgaactccacgccgacccctcagccgcgcccgccc
cagccgcagcagcagggcggctccccggcgaccccgctcggccacctccgcccgccttcc
ctcgcgggctcccccttccagggcctcttccacaccccgccccagcacaacccggccttc
cagatccacatgggcgccgccgcctcgccgcagaacccgcttatggccgctgccgccgcc
gccgccgccgcggcctccgccaagcgccctccccagaagccccccgcgcggccccccgcc
ccgggctcctcctcctccgggggcggcgccgccgccgccgccgccgcggccgcgtccgcg
gccgcggcgtacaaggccgctgccgccgcggccgccgtgggggcgaactccgccggcggc
gtcgacctcaccccggccgccgcgcggcgcaacaagaagcggaagctccccgagaagcag
ctccccgaccgcgtcgccgcgctgctcccggagtcggcactgtacactcagctgctcgag
ttcgagtcccgcgtcgacgccgcgctgcaccgcaagaaggtggacatccaggaggcgctc
aagtcaccccccgcgctgcagcgcacgctccgcatctacgtgttcaacaccttcgccaac
caggcgccgcgcaccatcccgccgcccaagaacgccgagccgcccacctggtcgctcaag
atcatcggccgcgtgctcgaggacggcgccgagctggaccccgccagcgtcgtgcccaag
cacaaccctgtgtaccccaagttctcgtccttcttcaagagggtgacgattgcgctcgac
ccgtcgctgtacccggagaacccgctgatcatttgggagaatgcgcggtcggccgcccca
caggaagggttcgaggtgaagaggaaaggggataaggagttctccgcgaatatccggctg
gagatgaactataaccctgagaagttcaagctctcgcagcctctgatggaggtgctcggg
gttgaggtggacactcgttcgagggtgattgctgccctctggcagtacatcaaagcgaag
aagctgcagaatccaaccgatccttcgttctttatgtgtgatccacagttgaagaaggtc
tttggggaggataagctgaggtttgcgatgctatcgcagaagatatcacagcatctctct
cctccgccgcccatcaacttggagcataagattaagctctctgggaatggcgcgcatgcg
agtgcttgctatgatgtgattgtggatgttcctttccctctgcagaaggagatgtctgca
tttcttgccaacactgagaagcacaaggacattgaggcatgtgatgaggtgatatctgct
tcgatcaagaagatccatgagcaccgcaggaggagggcattcttccttggtttcagccag
tccccagtggagttcatcaatgcactgatagcgtctcagagtaaagatttgaagctgatc
gcaggagaagcaaataggaatattgaaagagaaagacgtgcagacttctataatcaacca
tgggttgaggatgctgtcataagatacctgaaccgcaaaccggctagcggtaatgagggc
ccaggcggtggtgctggtggttcatga
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