Oryza sativa japonica (Japanese rice): 4335642
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Entry
4335642 CDS
T01015
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
4335642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4335642
Membrane trafficking [BR:
osa04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
4335642
Hops complex
4335642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
Clathrin
VPS11_C
zf-C3H2C3
TPR_Vps41
zf_RING_Vps8_fungal
zf-C3HC4_2
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
4335642
NCBI-ProteinID:
XP_015636902
UniProt:
B9FEU4
Q7XVC4
LinkDB
All DBs
Position
4:join(19125314..19125532,19126013..19126186,19126281..19126595,19127329..19129107,19129872..19130228)
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AA seq
947 aa
AA seq
DB search
MYQWRKFEFFEEKAAGRGVPGEIASRVSCCSGGRGRVAVGCDDGTVGLLDRGFRLSYGFQ
AYASSVLFLQQLKQRNVLITVGDDDQPSSLSSAICLKVFDLDKVQEEGSSTTSPFCVQIL
RIFTKQFPQAKITSFVVLEEAPPILLIAIGLDNGSIYCIKGDIARERITRFMLQVEDGTS
LPITGLGFRVEGQAHQLFAVTPSSITLFSLHDHPPRRQTLDQIGCETNAVAMSDRMDLII
GRPEAVYFYEIDGRGPCWAFDGEKKFVGWFRGYLLCIIEDQRSRKNTLNVYDLKNRLIAH
SMPVGDVSHLVSEWGYIILIMSDKKILCIGEKDMESKLDMLFKKNLYTVAINLVQSQQAD
PASTAEVLRKYGDHLYGKQEYDEAMSQYIHTIGHLEPSYVIQKFLDAKRIYNLTNYLEKL
HDRGLASKDHTTLLLNCYTKLKDVEKLNHFIKDEDGVGEIKFDVETAIRVCRAAGYHEHA
MFVAKKAGRHELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVE
ILLRLCTDGGDPMTRRGSNSMHLLMIPSPMDFVNIFVHSPKHLMEFLENYTKAVKDSPAQ
TEIHNTLLELYISKDLSFPSMSQENGFEEQNSKERKGKEVANGYKSGPREKGNLGKEDMN
VAKDIVDRQRKGLALLKSAWTSEMDDPLYDVDLALIICNANAFKDGLLFLYEKLKLFKEV
ISCYKQAHDHEGLIACCKKLGDSSQGGDPSLWGDLLKYFSELGEDCSKEVKEVLTYIEKE
DVLPPIVVLETLSKNPCLTLSVVKDYIARKLEQESKLIEEDRKSIDKYQDETELMKREIE
DLKTNAKVFQLSKCTTCTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVMEAK
QKLEHNARDHDLFFRQLRGSKDGFSVVADYFSKGIVSKTAIPPENGR
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgtaccagtggcgcaagttcgagttcttcgaggagaaggcggccgggcggggcgtgccc
ggcgagatcgcctcccgcgtcagctgctgctccggcggccgcggccgcgtcgccgtcggc
tgcgacgacggcacggtggggctccttgaccgcgggttccgcctctcctacggcttccag
gcctacgcctcctccgtcctcttcctccagcagctcaagcaaaggaatgttcttatcacg
gttggcgatgatgatcagccatcttcactatcgtcagcaatctgtctaaaagttttcgat
cttgataaagtacaagaagaaggttcaagtacaacaagtcctttctgtgttcaaattttg
cgcatcttcactaagcaatttcctcaggcaaagattacatcttttgtggttctagaagaa
gcacctcctatactgctaattgcgattggactggacaatggttccatttattgcatcaaa
ggtgacatcgcacgtgagcgtatcacgcgattcatgttgcaagtcgaggatggcaccagt
ttacctattactggtcttggtttccgagttgaggggcaagcacaccagttatttgctgta
actcctagttcaataaccttgtttagcttgcatgatcatccaccgaggaggcaaacgctt
gatcagattggttgtgagaccaatgctgtggcgatgagtgaccgcatggatctgattatt
ggtagacctgaagctgtgtatttctatgaaattgatggtagaggtccttgctgggccttt
gatggtgagaaaaagtttgttggatggtttcggggctatttactatgcattattgaagat
cagaggagccggaagaatactcttaatgtatatgatcttaagaatcggttgattgcacat
agcatgccagtgggggatgtttcacacttggtctctgagtggggatatattattctgata
atgagcgataaaaagattctttgcattggagagaaagatatggagagtaagcttgatatg
ttgtttaagaaaaatctgtatacagtcgcaatcaatcttgtacaaagtcaacaggccgat
cctgcttcaactgctgaggttctaaggaagtatggtgaccatctctatggaaaacaggaa
tatgatgaggccatgtcccaatatatccacaccattggccatcttgaaccatcatatgtt
atacagaagttccttgatgcaaaacgcatctacaatctcacaaactatttagagaagtta
catgatcgagggttagcatccaaagaccacaccacccttctgttgaattgctatactaaa
ctgaaagatgtggagaagcttaaccatttcatcaaagatgaagatggggtaggtgaaatc
aagtttgatgtggaaactgccataagagtatgtcgtgcagctggatatcatgagcatgct
atgtttgttgccaaaaaggctgggaggcatgagttgtatttgaaaattttactggaggat
cttggtagatatgatgaggcactgcagtatatatctagccttgaggcgaatcaagcaggt
cttactgtaaaagagtatgggaaaattcttgtggagcatagacctgctgaaacagttgaa
atactgttgagactctgtacagatggtggagatcctatgacaagaagaggttcaaatagc
atgcatttgcttatgataccttctccaatggactttgtaaacatatttgtacacagcccg
aaacatctcatggaatttctagagaattataccaaagcagtaaaggactcacctgctcaa
acagaaattcataacacccttctggagttatatatatcaaaagatttaagtttcccttct
atgtcacaagaaaatggctttgaggagcagaatagtaaggaaagaaaaggtaaagaagtt
gcaaatggctataaatctggcccaagggagaaaggaaatctgggaaaggaagatatgaat
gtcgcaaaggatattgttgataggcaaaggaaagggcttgcattgctcaagtctgcatgg
acatctgagatggatgatcctctgtatgatgttgatcttgctcttatcatctgtaatgca
aatgcattcaaagatgggctattgtttctgtatgagaaactaaaactattcaaagaagtt
attagttgctacaagcaagctcatgatcacgagggtctaattgcctgctgtaagaagcta
ggagattcatctcaaggtggggatccatctctttggggtgatctgttgaaatattttagt
gagcttggggaagattgctctaaagaggtcaaggaggtattgacctatattgaaaaggag
gatgttttgcctcctattgttgtgctagagacattgtcgaaaaacccatgcttgacactg
tcagttgtcaaggattacattgcccgcaaacttgagcaagaatcaaagctaatcgaagaa
gataggaaatctattgacaagtaccaggatgagacagaactgatgaaaagggagatagaa
gacctcaagacaaacgcaaaggtctttcagcttagcaagtgtacgacgtgcacctttacg
cttgaccttcctgcggtccacttcatgtgcatgcactccttccaccttcgctgccttggg
gacaatgagaaagaatgcccagaatgtgctcccgaatatagatctgtcatggaggcaaag
cagaagctagaacataacgctagagaccatgatctcttcttcaggcagctgaggggttca
aaggatggcttctctgtcgtcgcagactattttagcaagggcattgtgagtaaaacagcc
attcctcctgaaaatggccgataa
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