KEGG   Oryza sativa japonica (Japanese rice): 4335765
Entry
4335765           CDS       T01015                                 
Name
(RefSeq) histone deacetylase 9
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03082  ATP-dependent chromatin remodeling
osa03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    4335765
   03083 Polycomb repressive complex
    4335765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:osa03036]
    4335765
Enzymes [BR:osa01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     4335765
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     4335765
   HDAC complexes
    Sin3A-HDAC complex
     4335765
    BRAF-HDAC complex
     4335765
    REST complex
     4335765
    SHIP complex
     4335765
    MiDAC complex
     4335765
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     4335765
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    4335765
  Chromatin remodeling factors
   NuRD complex
    4335765
SSDB
Motif
Pfam: Hist_deacetyl D-ser_dehydrat
Other DBs
NCBI-GeneID: 4335765
NCBI-ProteinID: XP_066165741
LinkDB
Position
4:join(20633432..20633468,20634197..20634309,20634403..20634520,20635212..20635286,20635352..20635571,20635764..20635827,20636550..20636642,20636721..20636829,20637115..20637164,20637238..20637328,20637563..20637633,20637882..20637980,20638144..20638210,20638410..20638495)
AA seq 430 aa
MLEKDRIAYFYDGDVGNVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPTEL
AQFHSADYVEFLHRITPDTQHLYENELRRYNLGEDCPVFDNLFEFCQIYAGGTLDAARRL
NHKTCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDFFFPGTGDIKDIGEREGKYYAINIPLKDGIDDSGFTRLFKT
VIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAECVKFVKKFNIPLLVTGGGGY
TKENVARCWAVETGVLLDTELPNEIPDNEYIKYFAPDYTLKVSNVNMDNLNSKSYLSSIK
VQVMESLRAIQHAPGVQMQEVPPDFYIPDIDEDELDPDERVDQHTQDKQIHRDDEYYEGD
NDNDHEDGAR
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgctggagaaagacaggatagcctacttctacgatggcgatgtgggcaatgtctacttt
gggccaaatcacccgatgaaaccacatcgactttgtatgacacatcatcttgtgctttca
tatgatcttcacaagaagatggagatatataggccccacaaagcatatccaacagagctc
gcacagttccattctgctgattatgtggaattcttgcatcggataactcctgacacccaa
cacctgtatgaaaatgaattacgtagatacaatcttggagaagactgcccagtctttgat
aatctgtttgagttttgccaaatatatgctggaggaactctagatgcggctcgcagattg
aatcataaaacatgtgatattgctatcaattgggctggtggattgcatcatgcaaagaag
tgcgaggcatcagggttctgctacattaatgatctggttttgggaattctggagcttctc
aagtaccatgccagggttctctatattgatatcgatgttcatcacggggatggagttgaa
gaagccttttatttcactgacagggtaatgactgtaagtttccacaagtatggtgatttt
ttcttccctggcacaggtgatattaaggatataggagaaagagaaggaaaatattatgcc
attaacattccacttaaagatgggatagatgactccggctttactcgcctttttaaaaca
gttattgccaaagttgttgagacatatctgccaggtgctattgttcttcaatgcggggct
gattccttggcacgggaccgtctggggtgcttcaatctgtccattgaaggccatgctgaa
tgtgtgaagtttgtcaagaaattcaatatccctctactggtgactgggggtggtggatac
acaaaagagaatgtagcacgctgttgggctgttgaaactggtgttcttctagatacggag
ctcccaaatgaaattccagacaatgaatacatcaaatactttgctccagattatacattg
aaagtatcgaatgtgaacatggacaacttgaatagcaagtcatatctaagttcaatcaaa
gtgcaagtcatggagagtttgcgggccatacaacatgcgcctggtgttcagatgcaagag
gttccaccagatttttatatcccagatattgatgaagatgagctggatcctgatgaacgt
gtagatcagcatacccaagacaagcagattcatcgcgatgacgagtactatgaaggtgac
aacgacaatgatcatgaggacggggcccgttga

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