Oryza sativa japonica (Japanese rice): 4335963
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Entry
4335963 CDS
T01015
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4335963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4335963
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
4335963
mRNA degradation factors
5'-3' decay
Lsm complex
4335963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
4335963
NCBI-ProteinID:
XP_015633580
UniProt:
B9FFE2
Q0JCW8
LinkDB
All DBs
Position
4:join(22713034..22713097,22714865..22714933,22715024..22715139,22715228..22715290,22715830..22715907)
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AA seq
129 aa
AA seq
DB search
MSSWAGPDEIFLSTSLAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGE
LYCDVPLGLYVIRGENVVLIGELDREKDELPAHMTCVSEAEIRKAEKAEREARDLKGSMR
KRMEFLDFD
NT seq
390 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtgggccgggcccgacgagatcttcctctccacgtccctggccggcttcttg
gacaagaaacttattgtcctactacgagatggacggaagctgcttggcacactctgctca
tttgatcagtttgcaaatgttgttcttcagggtgcttgtgaacgagtaattgtaggtgaa
ctatattgtgatgttcctcttggtctatatgtgatccggggagagaatgtcgtattaatc
ggagaattggatcgtgagaaggatgaactccctgctcacatgacttgtgtttcagaggct
gaaataagaaaggccgagaaagcagaaagggaagcgagagatctgaaaggttcaatgagg
aagaggatggagttcttagactttgattag
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