Oryza sativa japonica (Japanese rice): 4336008
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Entry
4336008 CDS
T01015
Name
(RefSeq) cryptochrome-1 isoform X1
KO
K12118
cryptochrome 1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
4336008
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Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Cryptochrome_C
Motif
Other DBs
NCBI-GeneID:
4336008
NCBI-ProteinID:
XP_015636604
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Position
4:join(23043770..23044127,23045151..23045369,23045643..23046349,23046481..23047295,23048152..23048203)
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AA seq
716 aa
AA seq
DB search
MSVSSSSMGGGGGGDAGGRTVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWAPEEDGPY
YPGRVSRWWLSQSLKHLDASLRRLGAGKLVTRRSADAVVALLQLVRDTGATRLFFNHLYD
PISLVRDHRLKEMMAAEGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDP
AAPLLPPKRINSGDLSMCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPL
IHYSVNRKKADSASTSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLR
SIGLREYSRYLSFNHPCSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELW
ATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRE
LDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPL
PIVGLDAANARLQEALSEMWQLEAASRAAMDNGMEEGLGDSSEVPPIEFPRELQMEVDRE
PARVTANVLTTARRREDQMVPTMTSSLNRAETEISADFMNSVDSRAEVPTRVNFEPRTER
EENFRTTAGNVARTNGIHEHNNFQQPQHRMRNVLAPSVSEASSGWTGREGGVVPVWSPPA
ASDHSETFASDEADISSRSYLDRHPQSHRLMNWSQLSQSLTTGREVENSMQPNWIG
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgtcgtcgtcgtccatgggcggcggcggtggcggggacgccggggggaggacg
gtggtgtggttcaggagggacctgagggtggaggacaacccggcgctggcggcggcggcg
cgcgccggcggggaggtggtgccggcgtacgtgtgggcgcccgaggaggacgggccgtac
taccccggccgcgtgtcgcggtggtggctcagccagagcctgaagcacctcgacgcctcg
ctgcggcggctcggcgccggcaagctggtgacgaggaggtcggccgacgccgtcgtcgcg
ctgctccagctcgtccgcgacaccggcgccacgcggctcttcttcaaccatctctacgac
ccgatctcactggtcagggaccaccggctgaaggagatgatggcagcggagggcatcatc
gtgcagtctttcaatgcagacctgctgtacgagccgtgggaagttgtcgacgacgaaggc
caatctttcaccatgtttgcgcctttctggaataggtgcctcagcatgccgtatgatcct
gccgcaccgctgttgcctcctaagagaatcaattcaggtgacttatcaatgtgcccatca
gatgatctgatctttgaggatgactcggagaggggaagcaatgcacttcttgcccgagca
tggtcaccaggctggcagaatgcagacaaggcactgacagctttcctgaatggtcctttg
atccactactcagtgaatcgcaagaaagcagacagtgcaagtacctccctcttatcaccg
tacctgcatttcggtgagctgagtgtgcgcaaggtcttccaccttgttcggatgaagcag
cttgtgtggagcaatgagggcaatcgtgcagctgaagagagctgcaccctgttccttcgg
tccattggtctccgggagtactcacggtatctgagtttcaaccacccatgcagccatgag
aagccccttttggcacacctcaggttcttcccctgggtgatcaatgagtgctacttcaag
atatggcggcagggaaggactggttacccccttgttgatgccggcatgagggagctatgg
gctacagggtggttgcatgatcgtattcgtgtggtagtgtcaagtttcttcgtcaaagtc
cttcaactaccatggcgatgggggatgaagtacttttgggacacattattagacgcagat
cttgagagcgatgcactaggctggcagtatatctctggctctcttcctgatggccgagaa
cttgaccgcattgacaatcctcagctcgaaggctacaagtttgatccgcatggtgagtat
gtccgaaggtggcttccggagcttgcaaggttgccaacagaatggatacaccatccatgg
gatgcacccgcatctgtgctgcaagctgcaggagtcgagttaggctccaactaccctctc
cctatagttgggctagatgcagccaacgccaggctgcaagaagccctgtcagaaatgtgg
cagcttgaggcagcatccagggccgcaatggacaatggaatggaagaaggccttggcgac
tcctcggaggttccaccaattgaatttcctcgagaactacagatggaagttgaccgagaa
ccagctcgagtaacagccaatgtgctgacaacagctcgaagacgcgaggatcagatggtg
ccaacaatgacatcttcactaaacagggctgaaactgagatttctgccgattttatgaac
agtgtggacagtagggcagaggtaccaacccgtgtgaattttgagcctcgaactgagcgg
gaagaaaatttccgtaccactgcgggaaatgttgctagaacaaatggtattcatgagcac
aataatttccagcaacctcagcaccgtatgcgaaatgttctagcaccatctgtatcagag
gcatcaagtggctggactgggagagagggaggcgtagtcccagtttggtcgcctcctgca
gcatcagaccattcagaaacttttgcctctgatgaagctgacatttctagtaggagttat
ttggataggcatccacagtcgcaccggttgatgaactggagtcaattatcccagtcattg
acaacaggtcgggaagtggaaaattccatgcaaccaaattggatcggttag
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