Oryza sativa japonica (Japanese rice): 4336358
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Entry
4336358 CDS
T01015
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03022
Basal transcription factors
osa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4336358
09124 Replication and repair
03420 Nucleotide excision repair
4336358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4336358
03400 DNA repair and recombination proteins [BR:
osa03400
]
4336358
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
4336358
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
4336358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Tfb4
IBR_1
Castor1_N
Motif
Other DBs
NCBI-GeneID:
4336358
NCBI-ProteinID:
XP_015633683
UniProt:
Q7XM94
LinkDB
All DBs
Position
4:complement(join(25936371..25936498,25936928..25937306,25937387..25937848,25939272..25939601))
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AA seq
432 aa
AA seq
DB search
MYGVGGGGGGFNAPYTASARRRNHEDDDDEEEEESGEGRVLEAWERAYADDRSWEALQED
ESGLLRPIDTKTLVHAQYRRRLLLRSAASAAARIQKGLIRYLYIVIDLSRAASEMDYRPS
RMAVVAKYAEVFIREFFDQNPLSHVGIVTMKDGISHRLTEIGGSPESQIKALMGKLECSG
EPSLQNALELVHGYLDQVPSYGHKEVLFLYSALNTCDPGDIMETIAKCKKSKIRCSVIGL
AAEIFICKYLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAAANLIKMGFPQRGAE
DLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGLTLVSSPHLARSYHHLFPVQP
FDEVSSVHPNRLGQKGGQKCYGCQQSFINPDSQSSLHVRCPKCNQHFCLDCDIYIHESLH
NCPGCESQRSSS
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcgtcggcggcggcggcggcggcttcaacgcgccctacacggcatcggcccgg
cggcgcaaccacgaggacgacgacgacgaggaggaggaggagtccggcgaggggcgcgtc
ctcgaggcctgggagcgcgcgtacgcggacgaccggtcatgggaggcgctgcaggaggac
gagtcgggcctcctccgcccgatcgacaccaagaccctcgtccacgcgcagtaccgccgc
cgccttctcctccgctctgccgcctccgccgccgcccgcatccagaagggcctcatccgc
tacctctacatcgtcatcgatctctcccgggcagcttcagagatggattatcgacctagt
cgaatggctgttgttgcaaaatatgctgaggtattcataagggaattttttgaccagaat
cccttgagtcatgtggggatagtgacaatgaaagatgggatttcccatcgacttacagag
attggaggtagtcctgaatcacagattaaagcattgatggggaagcttgagtgttctggt
gaaccatctctgcagaatgctctagagcttgtccatggttatttagaccaggttccttca
tatggtcacaaggaagtattatttttgtactcggccctgaatacctgtgatcctggagat
atcatggagacaatagcaaaatgcaagaaatccaaaatacgatgttcggttattgggctt
gctgcagagatttttatctgcaaatatctgtgtgaagagactggcggatcctacacagtt
gcactggatgagtcccatttcaaggaattgcttctggaacatgctcctccaccacctgca
attgctgagtatgctgcagctaatttgattaagatgggttttccgcagagaggagcagag
gatcttatctccatctgctcttgtcacaagaaaataaagtcgggggctgaaggttacata
tgtcctagatgcaaagtcaatgtatgtgagcttccaacagaatgtcgaacttgcgggctg
acactagttagctctccacatctggcaaggtcctatcatcatctcttccctgtacaacca
tttgatgaggtgtcctccgtgcacccaaatagactaggtcaaaagggaggacaaaagtgt
tacggctgccagcaaagctttattaaccctgatagtcaatctagcctccatgttcgctgt
ccaaaatgcaaccaacacttctgccttgattgcgatatttacatccatgagagcttgcac
aattgcccaggttgcgagagtcagcgtagttcttcatag
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