KEGG   Oryza sativa japonica (Japanese rice): 4336384
Entry
4336384           CDS       T01015                                 
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
  KO
K10683  BRCA1-associated RING domain protein 1
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    4336384
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4336384
   04121 Ubiquitin system [BR:osa04121]
    4336384
   03036 Chromosome and associated proteins [BR:osa03036]
    4336384
   03400 DNA repair and recombination proteins [BR:osa03400]
    4336384
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     4336384
Ubiquitin system [BR:osa04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   BRCC complex
    4336384
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     4336384
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     4336384
SSDB
Motif
Pfam: BRCT zf-HC5HC2H BRCT_2 zf-HC5HC2H_2 zf-RING_UBOX zf-C3HC4 PTCB-BRCT zf-C3HC4_3 RTT107_BRCT_5 zf-C3HC4_4 zf-C3HC4_2 zf-RING_10 PHD_NSD zf-RING_5
Other DBs
NCBI-GeneID: 4336384
NCBI-ProteinID: XP_015634058
UniProt: Q7XPZ2 B9FG45
LinkDB
Position
4:complement(join(26112639..26112950,26113037..26113155,26113439..26113604,26113705..26113837,26113937..26114028,26114149..26114335,26114523..26114623,26114728..26114789,26114872..26114977,26115164..26115462,26115591..26115698,26115779..26115849,26115934..26115987,26116202..26116281))
AA seq 629 aa
MESFRRFLNPLVLNLQKMELELTCPVCLKLLNAPTMLPCYHTSCSKCATTRTMDGYSCAI
CKSAYRSQDLRPASHLEAIVNIHRSLSSTVSSMVTQQEAQADIPVAKTSFQGTPESGNRN
GAEKSDQVKSYTPVASKLAYNQSTGLAYGNVDGVKERNPALETRGAADVTAMPTILVQKG
PCRSQSSDGPRDLDCDSNDLEGELITSRSSPQSVLKREPNTANDDNRELKRQKSTDQDDR
QPAVAGAWKCEFCHSSKTTESTGPLSHYLHGEPLEDNQAWKPNVLHVHEKCIEWAPQAFF
TGDIANNLEPELARASKIKCSVCGLKGAALGCLVKSCRKSFHVPCAHGISGCRWDDENFV
MLCPSHSSKKLPCERSKSKNKKTSLQRSSSDTMLDDLNSPSTIHMDGLWTASPFLTSEWV
ICGSALSSQEKEILDQFEHQTGITVTNGWRSNVTHVIANTDECGACARTLKVLMAILAGK
WVLNINWLKACMEAKEPVPEEPYEISSDVHGSFDGPRMGRLRAMQNAPHLFAGLTFYFSG
HFMPNYKVHLEDLITAAGGSILDKADLSSTSLIIYSMEPPQGSDPDTLNEVIRKRKAEAE
ELAATIGSRAVPHTCVLDSIASCTVQLTM
NT seq 1890 nt   +upstreamnt  +downstreamnt
atggagagcttcaggaggttcctgaacccgctggtgctcaacctgcagaagatggagctg
gagctcacctgccccgtctgcctgaagttgctcaacgcgcctaccatgctgccatgttac
cacacttcctgcagcaagtgtgctactacacggaccatggacggttacagctgcgcgatt
tgcaaatcagcttatcgttctcaagacctaaggcctgcctctcacctcgaggcaatagtg
aacatccacaggagcctaagctctacagtcagcagcatggtcactcagcaggaggctcaa
gctgatattcctgttgcaaagacatcatttcaaggaactccagaatcgggaaacagaaat
ggagcagagaaatctgatcaggtgaaatcatacaccccggttgcttctaaactggcatat
aaccagtcaactgggcttgcatatggaaatgtggacggcgtgaaagaaagaaatcctgca
ttggagactagaggtgcggctgatgtgactgctatgcccacaattcttgtgcagaaggga
ccctgccgatctcaatcttctgatggccctagggatctggattgcgacagcaatgacctt
gaaggagagctgataacaagcagatcatctcctcaaagtgtcttgaaaagagaaccaaat
acagcgaatgatgataatagagaattaaaaaggcaaaagtccactgatcaggatgataga
caaccagctgttgctggtgcttggaaatgtgaattttgtcactcttccaaaaccactgag
agtactggccctctgtcccattatctgcatggtgagccattagaggataaccaagcatgg
aaaccaaacgttttacatgttcatgagaagtgcattgaatgggcccctcaagcgttcttt
actggtgacattgcaaataacttggagcctgagttggcccgtgcttctaagatcaaatgc
agtgtttgtggactaaaaggtgcagcccttggctgccttgtcaagagctgccgcaagagc
tttcatgttccatgtgcccatgggatatcaggctgccgatgggatgatgagaactttgtt
atgctgtgtccttctcattcctcgaagaagttgccatgtgagagatcaaagtcaaaaaat
aagaagaccagcttgcagcgatcatcttccgatacaatgcttgatgacctgaactcacca
tctacaatccatatggatggactttggactgcttcaccttttctcactagtgaatgggtt
atatgtggatctgctctctctagtcaggagaaggaaatcttggaccagtttgagcaccaa
actggcatcactgtaactaacggttggaggtcgaatgtgactcatgtgattgctaatacg
gatgaatgtggggcatgtgccaggacactcaaggttctcatggccatactagctgggaaa
tgggttctgaatataaactggctgaaagcttgtatggaggctaaagaaccagtcccagaa
gagccttatgagatcagttctgatgttcatggctcctttgatggccctcgcatgggaaga
ctacgagcaatgcaaaatgcaccacatctgtttgcaggattgaccttttacttcagtggc
catttcatgcccaattacaaggttcaccttgaagatttgatcactgcagctgggggatca
atcttggacaaggctgatctctctagcacatccttgataatttacagcatggagccacca
caaggaagtgatcctgatacccttaatgaggtcatcagaaagaggaaggctgaggctgaa
gaattggcggcaacgattggctccagggctgttcctcatacatgtgttctggattctatt
gcatcatgcacagtgcaattgaccatgtga

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