Oryza sativa japonica (Japanese rice): 4336421
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Entry
4336421 CDS
T01015
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4336421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4336421
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
4336421
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
4336421
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Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
4336421
NCBI-ProteinID:
XP_015633681
UniProt:
A0A0P0WCP7
Q7XUA1
LinkDB
All DBs
Position
4:complement(join(26539758..26540189,26540682..26540750,26541549..26541614,26542362..26542451,26542779..26542824,26543514..26543615,26543748..26543890))
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AA seq
315 aa
AA seq
DB search
MRDLQLSLNQTQRVRLEAALHELQTVAPAAAVTVADTIPVNDEDNILKGHGTSDQDGEVV
ATLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKRWRLEINFSQDAVLMLSSM
NLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGSLHLQARSQKYGKLERGQLLV
VPAYLVKRRKQHFHHLEQYDVDLILGCNGFIWVGEHVVVGENANMMENKLNLSAEVENFT
PLETRKHICRLANAVRVLSALGFTLTVELIIETAEASVSSNIEINNMLGAEFYVQTAERE
VKRRADLLRKKSGAR
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgagggacctccagctctcgctgaaccagacccagagggtgcgcctcgaggccgcgctc
cacgagctccagaccgtcgcccccgccgccgccgtcaccgtcgcggacaccatccccgtc
aacgacgaggacaacattctcaaggggcatgggacgtcggatcaggacggggaggtggtg
gcgacgctgtgcggcgtggtggagcgggtcaacaagctggtgtacgtgcggacgcttagg
gcgaggtataagccggaggttggtgatatcatagttggccgtgttattgagattgcacct
aaacgctggaggttggagataaattttagccaagatgctgttttgatgctttcttctatg
aatttacccgatggaattcagagaaggagaactgctgtcgatgaacttaatatgcggaca
atttttgaagaaaatgatgttatctgtgctgaagttcgtggtttccaacatgatggatct
ctgcacctacaagcacggagtcaaaagtatggaaagcttgagaggggtcaactgcttgta
gtacctgcatacttggtaaaacgacggaagcagcatttccaccacctcgagcaatatgat
gttgacttgattcttggttgcaatggattcatctgggtaggtgagcatgttgtggtaggt
gaaaacgctaatatgatggaaaataagctgaatttgagtgctgaagtggagaatttcact
ccactagaaacaaggaaacatatttgccggcttgccaatgctgtacgtgtgctttcagct
ctgggtttcactttgacagttgaactgataattgagactgctgaagcaagtgtatcatca
aatatcgagataaacaacatgcttggggctgaattttatgtccagacagcagagagagag
gtaaaacgtcgagctgatctgttgcgaaagaaaagtggagcaagataa
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