Oryza sativa japonica (Japanese rice): 4336501
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Entry
4336501 CDS
T01015
Symbol
OsJ_15580
Name
(RefSeq) dEAD-box ATP-dependent RNA helicase 6 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4336501 (OsJ_15580)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4336501 (OsJ_15580)
03036 Chromosome and associated proteins [BR:
osa03036
]
4336501 (OsJ_15580)
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
4336501 (OsJ_15580)
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
4336501 (OsJ_15580)
mRNA degradation factors
5'-3' decay
Decapping complex
4336501 (OsJ_15580)
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
4336501 (OsJ_15580)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
4336501
NCBI-ProteinID:
XP_015636231
UniProt:
Q7XMK8
LinkDB
All DBs
Position
4:join(27147869..27148155,27148918..27148978,27149790..27150024,27150150..27150388,27150685..27150936,27151036..27151216,27152002..27152090,27152573..27152646,27152738..27152816)
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AA seq
498 aa
AA seq
DB search
MDPRARYPPGIGNGRGGNPNYYGRGPPPSQHQQHQHQHQQPPHPHHHQYVQRQPQPQQTP
HNSQHQQWLRRNQIAAEAAGASEQKAPPVADGIDSSSQDWKAQLKLPPQDTRYRTEDVTA
TKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCI
PALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLY
QPVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEADKLLSPEFQPSIQELIRYLPSNRQI
LMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQ
INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL
FTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQEL
GTEIKPIPPQIDRAIYCQ
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggatccgcgcgcgaggtaccctcccggcatcggcaacggccggggcgggaaccctaac
tactacggccgtggcccaccgccatcgcagcatcagcagcaccagcaccagcaccagcag
ccgccgcacccgcaccaccaccagtacgtgcagcggcagccgcagccgcagcaaacgccg
cacaacagccagcatcagcagtggcttcggcggaaccagatcgccgccgaggccgcgggc
gccagcgagcagaaggcgccgcctgtcgcggacggcatagattcgagttcacaagactgg
aaggcccaactgaagctcccaccgcaagatacacgctacaggacagaggatgttactgct
accaagggaaatgaatttgaagactattttctgaagcgagaactccttatggggatatat
gagaaaggatttgaaagaccttctcctatacaagaagaaagtattcctattgcattaact
ggcagtgatattcttgcaagagcaaaaaatggaactggcaagactgctgcattttgtata
cccgcgctggaaaagattgatcaagacaaaaatgctattcaagttgttatattggttccc
acaagggaattggctctacaaacatcacaagtttgcaaggagcttgggaaacatttgaag
attcaagtgatggtcactactggaggaaccagcctaaaggatgatattgtccgtctttat
caacctgttcatttacttgttggaactcctggtcgcattttagaccttacaaagaaaggt
gtctgcgtcctgaagaactgttcaatgcttgttatggatgaggcagacaagcttctttct
cctgagttccaaccgtctattcaggaattgattcggtatcttccatcgaatcggcaaatt
ttgatgttctctgcaacattccctgtgactgtcaaggagttcaaggacaaatatctccct
aaaccctatgtcattaaccttatggatgaacttacattgaagggaattacacagttttat
gcttttgttgaagagaggcagaaagtccactgtcttaatactcttttttccaagctgcaa
attaatcaatcgataatattctgtaactcggtaaatcgtgttgaactattggcaaagaag
atcacagagcttggttattcttgcttctatatccatgctaaaatgttgcaagaccatcgg
aacagggttttccatgattttcgcaatggtgcatgcaggaacttggtttgtacagatctt
tttacaaggggaatagatatccaagctgttaatgttgttatcaattttgatttccccaag
agcgcagaaacatatctccatagggttggtagatctggcagattcggccaccttggtttg
gctgtgaatttgatcacctatgaggaccgttttaacttgtatcgcattgaacaagagctt
ggaaccgagataaaaccaataccacctcagatagaccgagcaatatattgccaatag
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