Oryza sativa japonica (Japanese rice): 4336704
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Entry
4336704 CDS
T01015
Symbol
OsRFC4, RFC4
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03030
DNA replication
osa03410
Base excision repair
osa03420
Nucleotide excision repair
osa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
4336704 (OsRFC4)
03410 Base excision repair
4336704 (OsRFC4)
03420 Nucleotide excision repair
4336704 (OsRFC4)
03430 Mismatch repair
4336704 (OsRFC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
osa03032
]
4336704 (OsRFC4)
03036 Chromosome and associated proteins [BR:
osa03036
]
4336704 (OsRFC4)
03400 DNA repair and recombination proteins [BR:
osa03400
]
4336704 (OsRFC4)
DNA replication proteins [BR:
osa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
4336704 (OsRFC4)
DNA Replication Termination Factors
ELG1-RFC complex
4336704 (OsRFC4)
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
4336704 (OsRFC4)
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
4336704 (OsRFC4)
Check point factors
HRAD17(Rad24)-RFC complex
4336704 (OsRFC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_14
AAA_22
Rad17
AAA_16
Viral_helicase1
Mg_chelatase
AAA_5
RCF1-5-like_lid
AAA_11
nSTAND3
AAA_24
AAA_assoc_2
AAA_25
AAA_19
AAA_28
RuvB_N
RNA_helicase
MeaB
AAA_30
AAA_3
DNAX_ATPase_lid
ABC_tran
NPHP3_N
SLFN-g3_helicase
bpMoxR
NTPase_1
T2SSE
DUF6120
IstB_IS21
KTI12
DNA_pol3_gamma3
AAA_18
DNA_pol3_delta_C
MCM
Motif
Other DBs
NCBI-GeneID:
4336704
NCBI-ProteinID:
NP_001406737
LinkDB
All DBs
Position
4:join(29103391..29103558,29103668..29103774,29103886..29103987,29104535..29104730,29105440..29105568,29105645..29105839,29105931..29106041)
Genome browser
AA seq
335 aa
AA seq
DB search
MDASSSSAPDLADAYDIPWVEKYRPTRVADVGGNSDAVARLQVIARDGNMPNLILSGPPG
TGKTTSILSLAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVI
LDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEIL
GRLMIVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPH
PLHVKNMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKE
TGFAHMRICDGVGSFLQLSGLLAKFALVRETAKAS
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggccgcctccagctcctccgcccccgccctcgccgacgcctacgacatcccgtgggtg
gagaagtaccgccccacccgcgtcgccgacgtcgtcggcaactccgacgccgtcgcccgc
ctccaggtcatcgcccgcgacggcaacatgccaaacctaatcctctccgggcctccgggc
accgggaagactacgagcatcctgtcgctggcacacgagctgctcggacctagctaccgc
gaggccgtgctcgagctcaatgcctcggacgacaggggcctggatgtggtgcggaacaag
atcaagatgtttgcgcagaagaaggtcacgctgcagccggggaggcacaagatcgtcatc
ttggatgaggctgacagcatgacatcgggagcacagcaagcactgagacgaacaatggag
atttattctaacaccacaaggtttgcgcttgcatgcaacacttcatctaagatcattgaa
cccattcaaagccgttgtgctattgtacggttctcaaggctttcagatcaggagattctt
ggccgactcatgattgtggtagcagctgagaaggttccttacgtgccagagggacttgaa
gctatcatctttactgctgatggtgacatgaggcaagctttgaacaacttgcaagctaca
gttagtgggttccgttttgttaatcaagaaaatgtgttcaaggtgtgtgatcaaccacat
ccgttgcatgtcaagaatatggtgaaaaatgtgcttgatggaaagtttgatgaggcttgc
tctgctctgaagcaattatatgatttgggctactctcccactgacataatcactactctc
ttccgggttatcaagaactacgacatggctgaatatctgaagctggaattgttgaaggaa
accggatttgctcacatgagaatctgcgatggtgttggctcatttcttcaattatcaggc
cttctggcaaagtttgcgttggtgagagaaacagcaaaagcatcatga
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integrated database retrieval system
