KEGG   Oryza sativa japonica (Japanese rice): 4336807
Entry
4336807           CDS       T01015                                 
Name
(RefSeq) DNA replication ATP-dependent helicase/nuclease JHS1 isoform X1
  KO
K10742  DNA replication ATP-dependent helicase/nuclease Dna2 [EC:5.6.2.3 3.1.-.-]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4336807
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4336807
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     4336807
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    4336807
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     4336807
SSDB
Motif
Pfam: Dna2 AAA_12 AAA_11 AAA_30 AAA_19 UvrD-helicase Dna2_Rift nSTAND3 Cas_Cas4 ResIII PhoH
Other DBs
NCBI-GeneID: 4336807
NCBI-ProteinID: XP_015634569
LinkDB
Position
4:join(30225620..30225907,30226005..30226139,30226305..30226484,30226578..30226643,30226760..30226960,30227059..30227112,30227197..30227258,30227360..30227492,30227661..30227771,30227880..30227976,30228510..30228586,30229001..30229066,30229303..30229455,30230264..30230319,30230396..30230456,30230528..30230638,30230704..30230760,30230882..30231016,30231089..30231319,30231873..30231947,30232033..30232154,30232253..30232325,30232410..30232514,30232600..30232767,30232951..30233020,30233096..30233247,30233446..30233523,30233616..30233708,30233833..30233970,30234109..30234148,30234222..30234295,30234649..30234783,30235217..30235336,30235650..30235811)
AA seq 1292 aa
MAPRKRTGAAAGAASKKPPASQPSQPAKFGILHFFERQSQASSQNAKRQKADGPSQPPAP
PPPPPPPPLIEEEPSEVSPEVTKTLAPKRVRFSPGMLIKQSQDDGGGEVVTWKISPVNDR
LRMVTSRQMTGMALHPCSNNEKHSSVESTKKWHSSLLGMSRCTASARNLDMCGTGPGGCD
GVEDTQSPFRTPPSLSYRCSEQLNGGVVSDGGPEQLGAGEHKKALLDLLDQVEDAIMEEE
LPADGENKGEQLINGDPKNISCSPIADSDQNVPSQKSLDAPPFDSFLVLEVSEKHKGDNL
PCDRYPVKVLRLLNEHGGKEHAVHLCDEWFHSLISPGDTVSVIGEFTDHGICIIDHDKNL
VIVHPELLISGTRVASSFHCPRRSVLDDRLKSNEYSTSALIGTLLHQVFQAGLLEDVPST
QFLEQQAKEVLLKNIESLYACGASESNTLKTLIEAVPKILNWYKCFMKVSKCNNVNFGQI
EGQKTVGVVEVMDIEEMAWAPRYGLKGIIDASIRSRVSCNGSSYDRVMPLEFKTGKGTSG
QTAVEHTAQVILYTLLMTERYLNKDIDLGLLYYLHTDQTLGIKVKRSDLIGLIMRRNELA
TEILKASISQSFPPMIQSPSTCNGCRHLVSCTIYHKAHGGNAATSGLGDLFDNLVNHLTV
AHHTFLKHWDRLIDLEARVSQVKKKEIFQPHHSNTGSRHSSPSYFVLDVTNGHSIDSSGK
SKRYIYTFLRQKLQPETADQPGEHVESVDFSLKCGDSVVLSTKSGRIAVANGYIRDLSRA
HITVSLPRRLRLPGSNSLLEQGDLQCEVWRIDKDESVSSFATMRLNLVQLFAENPQNSHL
RKLIVDLEAPRFDSGGLLSQDPALSYIQSLPNLNNDQQRSLHKILAAKDYALILGMPGTG
KTYTMVHAVKSLLMRGESILLTSYTNSAIDNLLMKLKAEGVDFLRIGRHEAVHPDVKGHC
LSTTDIQSVDAVKARMEQVQVVGVTCLGIYHPLLAHKKFDTCIMDEAGQITLPVSLGPLM
LATKFVLVGDHYQLPPLVQSSEARENGMGVSLFWRLSEAHPQAISALRCQYRMSSGIMEL
SNSLIYGNRLSCGSLEIANAKLKLSGRGPVRLKLKEILNPDRAVVFANTDEVPAFEAKEH
RTVNNPTEALIVSWITNELLKRGVAQDGVGIITPYNAQANLIQQHVDASVEVHTIDKYQG
RDKECIIVSFVRSNGNTRASGSSLLGDWHRINVVLTRAKKKLIMVGSAATLSTIPLLRLM
IEKVAERGGQLDLTNKDVQSIRELTSSRLNVQ
NT seq 3879 nt   +upstreamnt  +downstreamnt
atggctccacggaagcggacgggggcggcggcgggggcagcttcgaagaagccgccggcc
tcgcagccgtcgcagccggccaagttcggcattctccacttcttcgagcgccagtcccag
gcctcctcccagaacgccaagcgccagaaggccgacggcccctcgcagcctcccgcgccg
ccgccgcctccgccgccaccgccgctcatcgaggaggagccatcggaggtgtcgccggag
gtcaccaagactctggcgccgaagcgggtcaggttttctcctgggatgctgattaagcag
agccaggacgatgggggtggggaggttgtgacttggaagatctcgccggtgaatgatcgc
ctgcgcatggtcacttcaaggcagatgactggtatggcgcttcatccgtgctcaaacaat
gagaagcattcctcggtcgagtctacaaagaaatggcattcatcactgctgggcatgtca
agatgtactgcttcagcacgcaatttggatatgtgtggaactggtccaggtggctgtgac
ggtgtggaggacacccaaagcccatttcggactcctccatcactgtcctataggtgcagt
gagcagcttaatgggggtgtggtttctgatggaggacctgagcagttgggggcaggggag
cacaaaaaggcactacttgatcttttagatcaagtggaagatgcaatcatggaagaagaa
ttacctgctgatggtgagaataaaggagagcagctcataaatggtgatccgaaaaacatt
agttgttctcctattgctgacagcgatcaaaatgtaccctcccagaagtcccttgatgcc
ccgcccttcgatagctttttggtgttggaggtgtcagaaaagcacaaaggcgataactta
ccatgtgatcgctatcctgttaaggttttacgtttgctgaatgagcacggtgggaaagag
catgcagtccatttgtgtgatgagtggttccatagccttattagcccaggcgacacagta
agtgtcattggagaattcactgaccatggaatatgtattattgatcatgacaaaaatctt
gttatagtgcatccagaattactcatatctggaacacgggttgcttctagttttcattgt
ccaagaaggtctgttctcgatgacagactaaaaagcaatgaatattcaacaagtgctttg
attggtactctgctgcatcaagtattccaggcagggctacttgaagatgttccttcaacg
caattcttagagcagcaagccaaagaagttcttttgaaaaatattgagagtttatatgca
tgtggagccagtgaaagcaacacgcttaaaacgctgattgaagcagtccccaaaatattg
aattggtacaagtgctttatgaaggtatcaaaatgtaacaatgtaaattttggtcaaatt
gaaggacaaaagactgttggagttgtggaggtaatggatattgaggagatggcctgggct
ccaagatatggtttgaaagggattattgatgcttctattagatcaagggtttcatgcaat
ggtagttcatacgacagagtaatgcctctggagttcaaaactggtaaaggaactagtggt
cagacagctgtggaacacactgcccaagtgatattgtacacgctattgatgacggagaga
tacttgaacaaggatattgacttgggtcttctgtattatcttcacacagaccaaacattg
ggcatcaaagtcaagaggtctgatttaattggattaataatgcgtcggaatgagcttgcc
actgagatcctgaaggcatcgatttcacagagttttcccccgatgatacagagtccatct
acatgtaatggatgtcgacacctggtttcatgcaccatataccacaaggcgcatggaggc
aatgctgcaactagtgggcttggtgatttatttgataatctcgtgaatcacttgacagtt
gcacatcatacctttcttaaacactgggacagattgatcgatcttgaagctagagtttct
caggtcaagaagaaggaaattttccagccacatcattcaaatactgggagcaggcattct
tccccatcttattttgtccttgatgttacaaatggacattcaatagattcatctggaaaa
agcaaaagatacatatatacttttctgcgccagaagttgcagcctgagacagctgatcag
ccaggagaacatgttgaaagtgtagattttagcctcaaatgcggtgattctgtggtgctt
agcacaaaatctgggcgaatagctgttgcaaatggatacataagggacctcagccgtgcc
catataacggtttcattgccacgacgtctgagacttccaggaagtaattccttgttagag
caaggagatctccaatgtgaagtttggcgtatagataaggatgagtctgtttcttcattt
gctaccatgagactcaaccttgtccaactatttgctgagaatccacaaaactctcaccta
aggaagttgattgttgacctcgaggctcccagatttgatagtggaggactcctaagtcaa
gatccggcactatcatatatacaatcattgccaaatttgaacaatgaccaacagagatcg
ctgcataaaattctagcagcaaaagattatgcgcttatcctaggaatgcctggaacaggc
aaaacatatacgatggtgcatgccgtgaagtcattattgatgagaggggaatctattttg
ctaacctcatataccaattcagctatagataatttgcttatgaagttgaaggctgagggt
gtagattttcttcgaattggaaggcatgaagctgtacatcctgatgtcaaaggccactgc
ttgtcaacaacagatatacaatcagtagatgccgtcaaagctagaatggagcaagtgcaa
gttgttggagtcacttgtttgggaatttatcaccctttactagcacataagaagtttgac
acatgtatcatggatgaggcaggccagatcacattaccggtatctctgggacctttgatg
cttgcaacaaagtttgttctagtaggagatcattatcagcttcctccacttgttcagagt
tctgaagctcgagagaatggtatgggtgtcagtttattttggaggttgtcagaagcacac
cctcaagcaatttcagcattgcgatgccagtaccgaatgtcatctggcattatggagctc
tcaaattcattgatttacggcaataggttatcctgtggttcgttggaaattgcaaatgcc
aaactcaagctttctggcagaggtcctgttcgcttgaagctgaaagagatcttgaaccct
gatagggctgtcgtctttgcgaacacagatgaagtaccagcttttgaggccaaggaacat
agaactgtgaacaatcctacagaagcattaattgtttcatggatcaccaatgaattgcta
aagagaggtgtagctcaagatggggttggtataataactccatataatgcccaagcaaat
ctcattcagcaacatgtagacgcttcagttgaggttcatacaattgacaagtaccagggg
agggataaagaatgcattatagtatcttttgtacggtccaacgggaatacaagggctagt
ggttcttctttgcttggtgattggcacaggatcaacgttgtcttgacacgtgcaaagaag
aagctcatcatggtgggatccgctgcaactctttcaacgatcccattgttgagacttatg
attgagaaggtagctgagcgtggcggtcagttagatctgacaaataaggatgtacagtca
attcgagagctaacaagctctcgattgaatgtacaatag

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