Oryza sativa japonica (Japanese rice): 4336848
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Entry
4336848 CDS
T01015
Name
(RefSeq) uncharacterized protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
4336848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4336848
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
4336848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
GTP_EFTU_D4
MMR_HSR1
PBP1_TM
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
4336848
NCBI-ProteinID:
XP_015633525
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All DBs
Position
4:complement(join(30592100..30592234,30592321..30592452,30592525..30592764,30593033..30593201,30593495..30593994,30594082..30594192,30594303..30594634,30595104..30595238,30595340..30595489,30596310..30596448))
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AA seq
680 aa
AA seq
DB search
MPRKVVSGPDYDDEYDDDYDEYDEDYDDYGETGHSDDIQHPVKEEKESSKKSSSTVPVLW
RCSMCMFDNHESMVYCEMCGVFRESFMKSAKDGSIKVHGIPSDFGTPSMPKSDCTKMPVN
TRTTDFDGDPEIKNASISHEKVGSTQYTSAGSSSGAGKKVKHIALPEDVPVERTAQLISD
HFQLKEDQSSRASSSAQNEDVAQKLSSDIQKLGLEKNEVDTAKPYLPEEYKPEKWMFANE
ESGVLSQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKDMHKNEKEAKEKGKGSFAYAWAM
DESSEERERGVTMTVAVAYLETKKYRVVLLDSPGHKDFVPNMISGATQADAAILVVDACT
GSFEAGMDGEGGKSVGQTKEHAQLIRSFGVEQLIVAVNKMDAIGYSKERFEFIKVQLGSF
LRSCNFKDSSVTWIPLSAVENQNLIKIPSDVRLTSWYQGFCLLDAIDSLQLPSRDVSKPL
ILPICDVIKSQSTGQFAAFGKLETGAIRIGSKVLISPCGEVAAVKSIERDSNSCDIARAG
DNVAVSLQGIDGSKLILGGILCNPGFPVPVSNFLELRVLVLDVTIPILIGYQVEFHIHHV
KEAARVTKIVALLDKAGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLR
SSGSTIAVGVVTRVLRQDQN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgccacgcaaggttgtctctgggcctgactacgatgacgagtacgacgatgactatgat
gagtatgatgaggactacgatgattacggtgagaccgggcacagtgacgacattcagcac
cccgtgaaggaggagaaagagtcatcgaagaagtcctcaagtacggtgcctgtgctttgg
agatgctccatgtgcatgttcgataatcatgaaagcatggtgtattgtgagatgtgtggg
gtttttcgagaatcctttatgaaatctgccaaggatggttcaataaaagtccatgggata
ccaagtgattttgggacaccttcgatgccgaaatctgactgtaccaagatgccagtgaat
actcgtactacagactttgatggtgaccctgagataaagaatgctagcatatctcatgag
aaagttggttccacgcagtacacatctgctggtagctcatcaggcgctgggaaaaaggtg
aaacacattgcacttcctgaagatgtgcctgtcgagaggacagctcaattgatttctgat
cattttcagctgaaggaggaccagagtagtagggctagcagttctgcgcagaatgaggat
gtggcccagaaactttcttctgacatacagaagctaggtttagaaaagaatgaagtagat
actgcaaaaccttatttacctgaagaatataagcctgagaagtggatgttcgctaatgag
gaatcaggagtgctgagccaactaaaccttgcaatagtaggtcatgttgattctggcaag
tcaacactctctgggagactgctacatctgttaggaaggatatcgaaaaaagatatgcac
aagaatgagaaggaggctaaagaaaaaggaaaaggatcatttgcttatgcgtgggctatg
gatgaaagcagtgaagaaagagaaagaggcgtgacaatgactgtggccgtggcttatttg
gagactaagaagtaccgtgtagttttgcttgactctccaggccataaagattttgtacca
aatatgatatctggcgcaacgcaagctgatgcagctattcttgttgttgatgcttgcact
ggttcatttgaagctggcatggacggtgaaggagggaaaagtgttggccagacaaaagaa
catgctcagcttattagaagcttcggcgttgaacagcttattgttgcggtcaacaagatg
gatgccatcggctactcgaaagaaagatttgagttcatcaaggttcaacttggtagtttt
ctgcggtcatgcaatttcaaagattcatctgttacctggattcctcttagtgctgttgaa
aatcagaatttgatcaaaattccttctgatgtccgtttaacttcctggtatcaaggattt
tgtctcttggatgctatagattccttgcagcttccatctcgggatgtttcaaagcccctc
attcttcctatctgtgatgttatcaagtctcagtcaacagggcagtttgcagcctttgga
aaattagagactggagctattcgaattggttcaaaggttttaatttcaccttgtggggaa
gtggcggcagtgaaatccatcgagcgggattcaaattcatgtgacatagcaagagctggt
gataatgtagcggttagtttacagggtatcgatgggagtaagctaatactaggtgggatt
ctttgcaaccctggtttcccagtgcctgtctctaacttcttggagctaagggttctagtg
ttagacgtcaccattcctatccttattggctatcaggtcgaatttcacatacatcatgtg
aaggaggctgcgagggttacgaaaatcgtggcattgcttgacaaggctggcaaaccaagc
aaaactgcacctcgttttcttaagtcaaagcagaatgcagttgtgcaggttaccttagac
gctccggtctgtgttcaagaattctccaaatgccgagctcttggcagggcattcttaagg
tcttctggaagcacgatcgctgttggagtcgtaacgcgggtactccggcaagatcagaac
tga
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