KEGG   Oryza sativa japonica (Japanese rice): 4337408
Entry
4337408           CDS       T01015                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:osa04812]
    4337408
Cytoskeleton proteins [BR:osa04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     4337408
SSDB
Motif
Pfam: WD40 Katanin_con80 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_EML_2 WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_EML Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_EIPR1 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_IFT140_1st eIF2A Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_VPS8 Beta-prop_IP5PC_F Beta-prop_WDR19_1st DUF2071 Beta-prop_RIG_1st
Other DBs
NCBI-GeneID: 4337408
NCBI-ProteinID: XP_015636685
LinkDB
Position
4:complement(join(35134235..35134298,35134869..35134937,35135076..35135195,35135381..35135493,35135575..35135649,35135975..35136097,35136917..35137032,35137105..35137161,35137664..35138611,35138712..35138940,35139047..35139190,35139278..35139352,35140114..35140184,35140854..35140956,35141158..35141384,35141542..35141659,35141990..35142120,35142520..35142553))
AA seq 938 aa
MTTNTKRAYKLQEFVAHSSNVNCLKIGRKTSRVLVTGGDDHKVNLWAIGKPNSILSLSGH
TSAVESVNFDSTEVFVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCMSVDFHPFGEFFAS
GSLDTNLKIWDIRRKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNVVKLWDLTAGKLL
HDFKCHEGQIQCIDFHPHEFLLATGSSDKTVKFWDLETFELIGSTGPETTGVRSMTFNPD
GRSLLCGLHESLKVFSWEPIRCHDTVDVGWSRLSDLNVHEGKLLGCSFNQSCVGIWVVDL
TRLEPYATGTSTKLNGHSELKSSSSSTMPLQNDSGSRANIGRLSVLQNSENNIKSSTGRL
SVSQNSDSALKETKSTTSSGLVPVTPQRAGNGSSTKTVGNSTFASSGTNLKRGSLKSNNS
SSLQNFSKIDVVPVIIPRTSSGPELATDSRSDAADVGPVLSKSGRRIEIANDSRKESSDV
AAAVVPRTNSRTEMASDSAPVVGPRANLRMEVSADSAPIVPKSGRRLESSVESRKESTDV
ASAAAPKTSSRMEVAPDSAPLLSKAGRRVESATDSRKESADVAPVVPRTTSRMEMAPDSR
REISAGRMSPFRVQSRYSELRKLNNAKADADKVDAGSKNSETDDFTCQIYLPRRNGVVQS
GISEETREDAKPGVIDRMGFPSSAEPNTHRSENYVSRMRKPRDNCYIEVSRAGRTRPTAS
NWESRDQSPGNEEPTTSNSSSMAPTGRLYSSRGSSQAAETPTIASDEDVLSVLMEQHELF
LSSTRSRLTKLQIVHQMWQRNDIRGIIAAMEKMSDHAVSADVASVLMEKSETITLDLCTV
ILPVLTDLLESKTDRHLGVSLELLVKLVRTFGSVIHSTVSAGPSSVGVDLQAEQRRERCN
LCFIELEKVKNKLPFLSRRKGAVANTAQELSLVFQEVM
NT seq 2817 nt   +upstreamnt  +downstreamnt
atgacgaccaacaccaagcgcgcctacaagctccaggagtttgtggcgcattcatccaat
gtcaactgcctcaagattgggaggaagacttcacgagttctcgtgacaggaggagatgac
cataaggttaatctttgggctattgggaagcccaattcaattttgagtttatcagggcac
accagtgctgtggagtctgttaattttgattccacagaagttttcgtggccgcaggagca
gccagtggaacaataaaactatgggatttagaggaggcaaaaattgtccgcacgcttact
ggacataggtcaaactgcatgtcagttgatttccatccttttggagaattctttgcctcg
gggtcactggacacaaatctgaagatatgggatataagaaggaagggctgtatccacacg
tacaaaggccacacaagaggtgtaaatgcaattagattcacacctgatggccgctgggtt
gtgtctggtggtgaagataatgttgtgaagctctgggatctgacagctggaaagttatta
catgatttcaagtgtcatgaaggccagattcagtgcatagatttccatccccatgagttc
cttctggcaacaggttcatccgataaaactgtcaagttttgggatttggagacctttgaa
ttgattgggtctactggacctgagacaacaggtgttcgatccatgacattcaatcctgat
ggaagatctctgttgtgtgggttgcatgaaagtttaaaggttttctcttgggaaccaata
agatgtcatgataccgttgatgtgggatggtctagactgtctgatctaaatgtccacgag
ggaaaacttcttggttgttcatttaatcaaagttgtgttggaatatgggttgtagatcta
acgcgtcttgagccatatgcaacgggtacttcaacaaaattaaatggtcattcagagttg
aaaagttcgtcaagtagcactatgccattacaaaatgacagtggttcaagggctaacatt
gggcggttatcagttctacaaaattctgagaataacataaagtcttctacaggaagatta
tcagtttctcaaaattcagactctgcattgaaagagacaaaatcaacaacttcaagcggg
ttggttccagtcacacctcagagagctggtaatggctccagtaccaaaacagttggaaat
tcaacctttgcatctagtggcaccaacctgaagagaggttcactgaagagtaacaactct
tctagtcttcagaattttagcaaaattgatgtggtgcctgtgataataccaagaactagc
tcaggaccagagctggctactgattctaggagtgatgctgctgatgtgggccctgttctt
tctaagagtggtagaagaatagagattgcaaatgattctaggaaagaaagttctgatgtg
gcagcagctgttgttcccagaacaaactctagaacagaaatggcctctgattcagcacct
gttgttggtcccagagctaacttaagaatggaagtaagcgctgactcggcacctattgtt
cccaagtcaggcagaaggttagagtcttctgttgaatctaggaaagaaagtactgatgta
gcatctgctgctgctccgaagactagttcacggatggaagtggccccagattctgcacct
cttctttctaaggcaggcagaagggtagagtctgctactgattcaaggaaagaaagtgct
gatgtggcacctgttgttcccagaacaacttctagaatggaaatggctccggattctagg
agagaaatttctgctggaagaatgtcaccgtttagggtccaatcaagatatagtgaacta
cgaaagttaaataatgccaaagctgatgcagataaagttgatgcagggagcaaaaacagt
gaaacagatgattttacttgtcaaatataccttcctcggaggaatggtgttgttcagtct
ggaatttctgaagaaacccgggaagatgcaaaacctggtgtgattgacaggatgggattt
ccaagttctgctgaaccaaatacacaccgcagtgagaattatgtttctagaatgcgtaag
ccaagagataactgctatattgaagtttcaagagcaggaagaacaaggccaactgcttct
aattgggaaagcagagatcagtcacctggtaatgaagaaccgacaacaagcaattcttct
tcgatggctcctacaggccgattatattcatctagaggaagcagtcaagctgctgaaact
ccaacgatagcaagtgatgaggatgttctatctgttctaatggagcagcatgagctattt
ctaagctcaactcgatctcggttgacaaaattgcagattgttcatcaaatgtggcaaaga
aatgatatacggggcattattgcagcaatggagaagatgtctgatcatgccgtatctgct
gatgttgcaagtgttctgatggagaaaagtgaaacaatcacactagatttatgtactgtt
attctgcccgtccttactgaccttctggagagtaaaactgacaggcacttaggtgtttca
ctggaattgttggtgaagcttgtcaggacgtttggatcagtaatacattcaacagtatca
gctggtccctcttctgttggtgtagatctgcaagcagagcaaaggcgggagcgttgcaac
ctatgctttattgaattggagaaggtcaaaaataagcttccatttctttccagaagaaaa
ggggcagtcgcaaacacggcacaggagctcagtcttgtcttccaggaagttatgtag

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