Oryza sativa japonica (Japanese rice): 4337409
Help
Entry
4337409 CDS
T01015
Name
(RefSeq) uncharacterized protein isoform X5
KO
K14416
elongation factor 1 alpha-like protein
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
4337409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4337409
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
4337409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
AAA_22
Motif
Other DBs
NCBI-GeneID:
4337409
NCBI-ProteinID:
XP_015633797
LinkDB
All DBs
Position
4:complement(join(35146421..35146549,35146633..35146767,35146880..35147119,35147365..35147533,35147623..35148113,35148202..35148312,35148432..35148751,35149147..35149224,35149785..35149815))
Genome browser
AA seq
567 aa
AA seq
DB search
MTRKERHINIVPFKFDTPSPDDVVATGLKSSRSFRKVDTDAPHVTEKRVMDNDSSTPEKD
TTADSNLPVKSNEFGESSESVSVGSQNETLCLDHELQHLSLERKSQKSKANIKKPVSSSL
YKPEPWMLQHEDEGIPRQLNLAIVGHVDSGKSTLCGRLLHALGRISKKQMHKYEKEAKEK
GKGSFAYAWAMDESADERERGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQS
DAAILVIDASIGSFEAGMGINGIGQTKEHSQLVRSFGVDNLIVVVNKMDSVEYSKERFNF
IKSQLGAFLRSCGYKDSAVAWVPISAMENENLMTTASDTRLSSWYDGNCLLKAIDTLPPP
SRDVSKPLRLPICDVFSSHKLGQVAIGGKVEVGATRSGSKILVMPFGELAVVKTIERNSS
SCNLARAGDNVAIGLQGIDPSHIMPGGVICHPDYPVSVASCLELKILVLDITVPILVGLQ
FELHIHHAKVSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNL
KALGRVFLRSQGNTIAVGIVSRVREQA
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgacccgtaaagaacgccacattaacatagtgcctttcaagtttgatacaccatctccg
gatgacgtggtcgctacaggactaaaatcgtcgagaagttttagaaaagttgacacagat
gctccccatgtcactgaaaagagggtgatggataatgatagttctacacctgagaaggat
acaactgcagactcaaatttgcctgtaaagtcgaatgaattcggtgaaagtagtgagagt
gtttctgttggtagtcaaaatgaaacactttgcttggaccatgagctacagcatttgagt
ttggagaggaagtcacaaaaaagtaaagccaatattaaaaagccagtttcttcatccctg
tacaagccagaaccatggatgctccagcatgaagatgaaggcatccctagacaattaaat
cttgctattgttggccatgtcgattctgggaaatcaactctatgtggtcgtttgttacat
gccctggggaggatttcaaaaaagcaaatgcataaatatgagaaggaagctaaagaaaag
gggaaaggatcatttgcatatgcttgggcaatggatgagagtgctgatgaaagggagcgt
ggcattacaatgactgtcggtgttgcatactttgacaccaaaaattaccatgttgttttg
ctggactcccctggccacaaagattttgttcctaatatgatatctggagcaacacaatct
gatgcagctatcctagttattgacgcttctataggatcatttgaagcaggtatgggcatc
aatgggattggacagacaaaggagcactcgcagcttgttagaagctttggcgtggataac
ttgatagttgttgttaacaagatggactcggtggaatattcaaaagagcgatttaatttt
atcaaatcacagcttggtgcttttctgcggtcatgcggttacaaagactcagcagttgcc
tgggttccaattagtgcaatggagaatgagaacttaatgacaacagcttcagatactcga
ctatcatcatggtatgatggaaattgcctgttgaaagccattgacacattaccgcctcct
tctcgtgatgtttcaaagccactgcgccttccaatttgtgatgtcttttcgtcacataag
ctggggcaagttgcaattggtggtaaagtagaggttggagcaacccgaagtggttctaag
atcctcgtcatgccttttggggagttagctgtggtgaaaactattgagcggaattcctct
agttgcaatttagcaagagctggggacaatgtcgctattggtttgcaagggattgaccct
agtcatatcatgcctggcggagtcatatgccatccagattatcctgtgtccgtggcttct
tgcttggagctaaaaattttggtcctagatatcactgtaccaatactggttggcttgcag
tttgagctccacatccatcatgcgaaggtgtctgcaagcatggtgaaaatactgtcattg
ctggagcagaagaccggcaaagcctcaaagaagataccacgatttctcacctcgagacag
actgctgtaatcgaggtgaagctggagaaagaggtatgcgtggaagaattctcaaacctg
aaagcgctaggccgagtgttcctacgatctcagggaaacaccatcgcggttggcattgtg
agccgagtacgagagcaggcttag
DBGET
integrated database retrieval system
