Oryza sativa japonica (Japanese rice): 4337547
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Entry
4337547 CDS
T01015
Name
(RefSeq) vacuolar sorting protein 3 isoform X1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
4337547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4337547
Membrane trafficking [BR:
osa04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
4337547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-Vps39_C
CNH
Vps39_1
Clathrin
TPR_Vps41
EAD11
Motif
Other DBs
NCBI-GeneID:
4337547
NCBI-ProteinID:
XP_015640286
UniProt:
Q0DLF9
A0A0P0WGT9
LinkDB
All DBs
Position
5:join(226933..227871,228135..228410,229142..229338,229427..229568,229748..230026,230105..230177,230495..230543,231333..231597,231740..231795,231941..232009,232192..232303,232846..232935,233119..233289,233613..233705)
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AA seq
936 aa
AA seq
DB search
MGSNTPPSRAALEPFATLDPAALAGLPASSPLTVRSAAISSPYLYLGTGGGKLLLFTLDS
PSPDFLRLLPIGPTRPVSAILPLPAVARLLLLADGLLLLADPLLSRPVRRLGSVRNVAAV
AARASESDDDRPSCSLAVSVGKKLLLVDLTLHDADELEVRTRDIALVDGVKALAWVGDSV
FVGTASGYSLFSTTNAQGGDIFTLPESSRPPRVKPLSGGDEVMLLVDNVGVVVDRSGHPV
GSSFVFNTTPDCIAEVYPYVVVAGDSKVDVYRRKNGAHLQAIPFARPGTGGLIVASEDAG
IGSDVVVIATAYKVFCYRKVSAVEQIKALLRRKSYAEAISLLQEFEADGEISNDMISFVH
AQLGFLLFFDLRFEDAVNHFLLSETMQPAEIFPFIMRDPNRWSDLVPRKRYWGLHAPPKP
LEEVIDDGLVTLQQALFLKKAGVDTVVDDDFLSNPPSRADLLEVAIRNIIRYLCASREKD
LSSSEMEGVDTLLMYLYRALNLVDDMEKLASSQNSCVVEELESLLDDSGHLRTLAFLYGS
KGMCSKSLGIWRILARNYSTGLWKDHAILPETDSLETSVGKMSGEEIAAVEASKILQASS
DQDLVLEHLGWVADIDQELATAILTSEMREKQLSPEKVVAAIDPEKVGIHQRYLQWLIEE
QECDEPHYHTSYALSLSRSAMDAVRLGSNNEERNNKEFDSDMQFIYLLRERLQFFLQSSD
LYDPEEVLYVISESELWLEKAILYRKMGQENIVLQILALKLEDSEAAEQYCAEIGRDDAY
IQLLDLYLDPKNGKGPMFTAAVRLLHNHGESLDPIQVLERLSADMPLQLASDTILRMLRA
RVHHHRQGQVVHNLSRATNLDARLTRLEERSRHVQLTDESICDSCRARLGTKLFVMYPDD
SVVCYRCYRNQGDSASPHGRNFRKGGIFKQSWLVSR
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgggatccaacactccaccctcccgcgccgccctcgagcccttcgccaccctcgacccc
gccgccctcgccggcctcccagcctcctccccgctcaccgtccgctccgccgccatctcc
tccccatacctctacctcggcaccggcggcggcaagctcctcctcttcaccctcgattcc
ccctcccccgacttcctccgcctcctccccatcggccccacccgccccgtctccgccatc
ctccccctccccgccgtcgcccgcctcctcctcctcgccgacggcctcctcctcctcgcg
gaccccctcctctcccgccccgtccgccgcctcggctccgtccgcaacgttgccgccgtc
gccgcccgcgcctccgaatccgacgatgatcgcccctcctgctccctcgcggtctccgtc
gggaagaagctgctcctcgttgacctcaccctacacgacgccgacgagttggaggtgcgg
acgcgtgacatcgccctcgtcgatggcgtcaaggcgctcgcttgggtcggggactccgtc
ttcgtcggcactgcctcgggctactcgctcttctccaccacgaacgcccaaggtggcgat
atattcacgctccctgagtcctccaggccacccagggtgaagcccctgtccgggggcgac
gaggtcatgctgctcgtcgacaatgtcggggtcgtcgtggaccgatcggggcatcccgtt
ggaagcagcttcgtctttaacaccacgccggattgtatagcggaggtgtacccctatgtt
gttgttgccggggactccaaggtagatgtctacagaagaaagaacggcgcacatttgcag
gctattccttttgcaaggcctggtacaggtggactaattgtagcgagcgaggatgccgga
attggcagcgacgtagttgtgattgctacggcttataaggtattttgctaccgtaaagta
tcagcggtggaacagatcaaggcactactacgaagaaagagttatgcagaagctatttct
ttgttacaagagttcgaggccgatggggaaatctcaaatgacatgatttcctttgtgcat
gcacaacttggattcttgttgtttttcgacttgcgtttcgaggatgctgtaaatcatttc
ttgctctcggaaactatgcaaccagcagaaatatttccattcatcatgcgggaccctaat
cgttggtcagatctggtgccaagaaagcgttattggggcttgcatgctcccccaaagcct
cttgaagaagttattgatgatgggctagtaacacttcaacaggcattgtttctcaaaaag
gcaggtgtggacacagttgtggatgatgatttcctttcaaatccaccaagcagagctgat
ctgctggaagtagcaatcagaaatattatcaggtacctgtgtgcatcccgagagaaggat
ttatcttcttcagagatggaaggggttgatactcttctgatgtatctttatagagctctc
aatcttgttgatgacatggagaagcttgcatcatctcagaatagctgtgttgtggaggaa
ctagaatcacttttggatgactctggacatctgcggacgcttgcattcttatatggcagt
aaaggaatgtgctccaaatcccttggtatctggcgtatcttagcaaggaattacagcact
ggtttgtggaaggatcatgcaatcctacctgaaactgactctcttgaaacttctgttggt
aaaatgtctggtgaggaaattgctgccgttgaagcctccaagatacttcaagcatcatct
gatcaggaccttgttctggagcatcttggatgggtggcagacattgatcaagagcttgca
actgcaattttaacatctgaaatgagggaaaaacagctttctcctgaaaaggttgttgct
gccattgatccagagaaggttggcattcaccaaagatatttgcaatggttgattgaggaa
caggaatgtgatgagcctcactatcacacgtcatatgcattgtccctctccagatctgcc
atggacgcagtccgtttgggatccaacaatgaagagagaaacaataaagaatttgattct
gatatgcagttcatttatctattgagggaaaggttgcaattttttttgcaatcgtcagat
ttgtatgacccagaagaagtgctatatgtgatttcagaatctgagctatggctggaaaag
gctattttgtataggaagatgggccaagagaacattgtacttcagatattagcgctgaaa
ctggaggatagtgaagctgctgagcagtactgtgcagagattggtcgagatgatgcctat
attcagctgttggatttgtatctggaccccaaaaatgggaaaggacccatgtttacagca
gccgttcgacttctccataaccatggggaatcattggatccaatacaagtgttggagaga
ttatctgctgatatgcctcttcagctagcatcagatacaattttgcgaatgctgagagcc
cgggtgcaccatcatcgtcaagggcaggtagttcataatttatcacgcgcaacgaacctt
gatgcacggttgaccagattagaggagaggtcaaggcatgtgcagctaactgacgagagc
atatgtgattcatgtcgagctcgccttggcaccaagctgtttgtcatgtacccagatgac
tcagttgtatgctacaggtgctaccgaaatcaaggtgattctgcatctccacatggacgc
aacttcaggaaaggtggtatatttaaacaaagctggctcgttagtagataa
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