Oryza sativa japonica (Japanese rice): 4337577
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Entry
4337577 CDS
T01015
Name
(RefSeq) uncharacterized LOC4337577
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
osa03016
]
4337577
Enzymes [BR:
osa01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
4337577
Transfer RNA biogenesis [BR:
osa03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
4337577
Prokaryotic type
4337577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-GeneID:
4337577
NCBI-ProteinID:
NP_001406958
LinkDB
All DBs
Position
5:complement(join(459658..459728,459908..459945,460461..460544,460663..460772,461273..461383,461720..461798,461988..462070,462153..462208,462782..463616))
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AA seq
488 aa
AA seq
DB search
MLRTGGGARATAAAQLLSSSSSPPPLRLPRRFLSLTATPYPLYYDLLLYRPSYPNPPKSS
AADDRHTRPTDDHLDRAKRRYLRKRRSRLLPDPDATTAKPSSSSSSEFVELKPEVVDFPR
LHAREEALYFHDAFALPWEKDKHYRMLYRLEKKYFPDQSLDNAFVPADASPPSSDAADKG
LVFFDDDDNNKEAEVKKKKDGEDRGEVLERKVEDFFRSLKKGPGHGEANVMKAKKKEPPQ
VRHEADEWPQPHLASRRTELPPRWNGPTGTVVLIDKPKGWTSFTVCGKLRRLVNVQKVGH
AGTLDPMATGLLIVCVGKATKVVDRYQGMVKGYSGVFRLGEATSTWDADSPVIQREPWEH
IKDEDIRKVAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGETVELSPRRISIHQFDIER
SLEDRQNLIFRVICSKGTYIRSLCADLGKALGSCAHLTALRRDSIGDFSVNDAWSFAELE
EQITKGYL
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgcttcgcaccggcggcggagcgcgagccacggcggcggcgcagctgctctcctcctcc
tcctcgccgccgccgctccgcctcccccgacgcttcctctcgctgacggccaccccctac
ccgctctactacgacctcctcctctaccgcccctcctaccccaatccgcccaaatcctcc
gccgccgatgaccgccacacccggcccaccgacgaccacctcgaccgcgccaagcgccgg
tacctccggaagcgccgcagccgcctcctccccgaccccgacgccaccaccgccaagccc
tcctcctcctcctcgtcggagttcgtggagctgaagccggaggtggtggacttcccgcgg
ctgcacgcgcgggaggaggcgctctacttccacgacgcgttcgcgctaccctgggagaag
gacaagcactaccgcatgctctaccgcctcgagaagaagtacttcccggaccaatccctc
gacaacgccttcgtccccgccgacgcctcgccgccttcctccgacgccgccgacaagggc
ctcgtcttcttcgacgacgacgataacaacaaggaggcggaggtgaagaagaagaaggat
ggcgaggatcgaggggaggtgttggagaggaaggtggaggatttcttcaggtcattgaag
aaaggccctggccatggcgaggctaacgtgatgaaggcgaagaagaaggagcctccgcag
gtgaggcacgaggcggatgaatggccgcagccgcatctcgcgagcaggagaacggagctg
ccgccgaggtggaacggcccgaccgggacagtcgtgctcatcgacaagcccaaaggctgg
acttcatttactgtttgtggaaagctgcggcgattagtgaatgtgcaaaaggtcgggcat
gctggtactctggatccaatggcaactggactgttgattgtttgtgtgggtaaagcaacc
aaagttgttgatagatatcaaggaatggttaaaggctatagtggtgtttttcgacttgga
gaagctacatcaacctgggatgcagattcaccagttatccagagagaaccatgggaacac
attaaagatgaagatattagaaaggtagcagcatcattcaggggcgagatatggcaagtt
cctccaatgttttctgccattaaggttggtggtgaaaaaatgtatgacaaagcaaggagg
ggtgaaacagtagagctttcaccaaggcgaatatcaatacaccagtttgatattgagcgc
agtttagaagacagacaaaatctgatatttcgagttatttgctcaaaaggaacatatatt
cgatccctctgtgcagatttggggaaagcgctcggaagctgtgctcatttaactgccttg
cggagagactcaattggcgacttttcagtcaatgatgcttggagttttgctgagctggag
gaacaaatcacaaagggatatttatga
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