Oryza sativa japonica (Japanese rice): 4337594
Help
Entry
4337594 CDS
T01015
Symbol
OsJ_16860, OsRPA70c, RPA1C, RPA70C
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C
KO
K07466
replication factor A1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03030
DNA replication
osa03420
Nucleotide excision repair
osa03430
Mismatch repair
osa03440
Homologous recombination
osa03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
4337594 (OsJ_16860)
03420 Nucleotide excision repair
4337594 (OsJ_16860)
03430 Mismatch repair
4337594 (OsJ_16860)
03440 Homologous recombination
4337594 (OsJ_16860)
03460 Fanconi anemia pathway
4337594 (OsJ_16860)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
4337594 (OsJ_16860)
03032 DNA replication proteins [BR:
osa03032
]
4337594 (OsJ_16860)
03400 DNA repair and recombination proteins [BR:
osa03400
]
4337594 (OsJ_16860)
Transcription factors [BR:
osa03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
4337594 (OsJ_16860)
DNA replication proteins [BR:
osa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
4337594 (OsJ_16860)
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
4337594 (OsJ_16860)
MMR (mismatch excision repair)
4337594 (OsJ_16860)
DSBR (double strand breaks repair)
HR (homologous recombination)
4337594 (OsJ_16860)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
zf-CCHC
tRNA_anti-codon
zf-CCHC_2
DUF223
DUF8363
Motif
Other DBs
NCBI-GeneID:
4337594
NCBI-ProteinID:
NP_001406966
LinkDB
All DBs
Position
5:join(603894..604186,605491..608053)
Genome browser
AA seq
951 aa
AA seq
DB search
MEPQLTPGAVQAIAEHPDGTGTIQPVLQVVDVRPVTTKNAPPTPKPAERFRMMLSDGVNT
QQSMLATALNPLVKDATLRPGTVVQLTDFMCNTIQGKRIIIVVKLDVLQNDCIVIGNPKH
YEPKSLTKEQDPNLQASVAQTNNGTYSGGASMLGPSVAPRAEQAASNSSYGGPYNSAQGM
LGSSIGRTVEPGPANVSAVGSYGAISAQNTTNANMMQPTSQLNIMNANTMQPTSQLNTMN
ANTMQPTSQLSSLNPNQNQRFAAPASGGVFGPPGNAYGQPSRPSYQQPPPVYMNRGPASR
NDSATRIIPITALNPYQPKWTIKARVTAKSDIRHWSNARSSGTVFSFDLLDAQGGEIRAQ
CWKESADKFFGQIEVGRVYLISRGSLKPAQKKYNTLNHDYEITLDIGLSTVEVCSDDDNS
IPRLQYNFRQISELENMANETIVDLLGVVTSVSPSATIMRKIGTETRKRSIQLKDLSGRS
IEVTLWGNFCDAEGQQLQLQCDSGSNPIIAFKGARVGDFNGKSVSTIGSTQLIINPDFPE
VERLRQWYMTEGKTAPCISLSREMLNMGRTDARKTIAQIKDENLGRLEKPDWITVKAAIS
HVTTESFCYPACPKLLPVGRQCNKKAINNGDGMWHCDRCDESFQNPEYRYMLRFQIQDHT
GSTYASAFDEAGEQIFGRKAGELFSIRNVDQDDAQFAEIIEGVRWHLYLFKLKVKEETYN
DEQSLKCTAVKVEKLDPSKESNVLLGAIDNLLLDPKGQSDLAPNAGFTDPVGGHGAPTSS
NAYAMNTGGVNQFGQQASISAGMSTPLAATRNLQTCSICGANGHSAQICHVGADMDMQET
SAGGSSMGNYNSIAGNGSSECYKCKQPGHYARDCPGQSTGGLECFKCKQPGHFSRDCPVQ
STGGSECFKCKQPGHFARDCPGQSTGAQHQTYGNNVAASRGYNRQSFVGGY
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atggagccgcagctgacgccgggggcggtgcaggcgatagcggagcacccggacgggacg
gggacgatccagccggtgctgcaggtggtggacgtgcggcccgtcaccaccaagaacgcg
ccgcccacgcccaagcccgccgagcgcttccggatgatgctctccgacggcgtcaacacg
cagcagtccatgctcgccaccgccctcaaccccctcgtcaaggacgccacgctccgcccc
ggcaccgtcgtccagctcaccgacttcatgtgcaacaccatccagggtaaaaggattatt
attgttgtgaaacttgatgttctgcaaaatgactgcattgtaattgggaaccctaaacac
tatgaaccaaagagtctaactaaggagcaagaccctaacttacaggccagtgtggctcaa
accaataatggaacctattctggtggcgcaagcatgctgggcccctccgttgcgccaagg
gcagagcaggctgctagcaacagttcatatggtggaccttataatagtgctcaaggaatg
ttgggttcttctattggcaggacagttgaacctggtcctgcaaatgtttctgctgttggc
tcttacggtgcaatatcagcacagaacacaacgaatgccaacatgatgcagcctacatct
cagctgaacataatgaatgccaacacgatgcagcctacatctcagctgaacacaatgaat
gccaacacgatgcagcctacatctcagctgtcctcgttgaaccctaatcaaaaccaaagg
tttgcagctcctgcttcgggtggagtctttggccctcctggcaatgcttatgggcagcct
tcacgtccttcatatcagcagccacctccagtgtatatgaatagagggcctgcctctagg
aatgactctgcaactcgtatcatcccaattaccgcgttgaatccataccagcctaagtgg
acaatcaaggcaagggtgacagcaaagtctgatatcaggcattggagcaatgccaggagt
tcaggaacagttttctcgtttgatcttcttgatgcacaaggtggagaaattcgtgcacaa
tgctggaaagaatcggctgataagttttttggccaaattgaggttggtagggtgtatttg
atatctagaggatcactgaagcccgcccagaagaagtataacactttgaaccatgattat
gaaataactctggatatcgggttatcaactgtcgaggtttgctctgatgatgataacagc
atccccaggctgcagtacaatttccggcagatcagcgaactagagaatatggctaacgag
accattgttgatttacttggtgttgttacatcagttagcccttctgcaacaataatgagg
aagatcggcactgaaacccggaaaaggtctattcaactgaaggacttgtctggccggagc
attgaagtaacattatggggaaacttctgtgatgctgagggtcagcagttgcagttgcag
tgtgattctggttcgaaccctataattgcttttaaaggtgcccgtgtgggtgattttaat
ggcaaatcagtgagcacaattggttcaacccagttaattataaatccagactttcctgag
gtggaaaggctgaggcagtggtacatgacagaaggaaaaactgctccttgcatttcttta
tctcgagaaatgcttaatatgggccggactgatgcccgcaaaacaattgcacagatcaag
gatgaaaatttgggacgattagagaagccagactggatcactgttaaggctgcaatctcc
catgtgactactgagagtttttgttatccagcttgcccaaagctcttgcccgtcgggagg
cagtgtaataaaaaggcaataaataatggtgatgggatgtggcattgtgaccgatgtgat
gagagttttcaaaatcctgaatataggtacatgcttaggttccagatccaagaccacact
ggtagtacctatgctagtgcgttcgatgaggcaggtgagcagatttttggtcgcaaggca
ggagaacttttctcgataagaaatgtcgaccaagatgatgcacaatttgcagagatcata
gaaggggtccggtggcatctatatctattcaaactgaaggtcaaggaagaaacctacaat
gatgagcaaagcttgaaatgcaccgctgtcaaggttgaaaaactggacccatcaaaagag
agcaacgtcctacttggagcgattgacaaccttttactggacccaaaggggcaaagtgat
cttgcccctaatgctggtttcaccgatccggtaggcggtcacggtgcgcctacatctagc
aatgcctatgccatgaatactggtggcgtgaatcagtttgggcagcaagcgagtataagc
gccgggatgtctactccactagcagcaacacgaaacttgcagacatgcagcatttgtgga
gcaaatgggcacagcgcccagatctgccatgtgggtgcagatatggatatgcaggaaaca
tcagccggtggaagctccatgggtaactacaactccatcgctggcaacggcagctcggag
tgttacaaatgtaaacagcccgggcactatgctagagactgtccagggcagtccactggt
ggcttggagtgtttcaaatgtaaacagcctgggcacttttctagagactgtccagtgcag
tctactggtggctcggagtgtttcaaatgtaaacagcctgggcacttcgctagagattgt
ccagggcagtctactggcgcccagcaccagacatatgggaataatgttgcagcatcaagg
ggttacaataggcaatcctttgttggtggctactga
DBGET
integrated database retrieval system
