Oryza sativa japonica (Japanese rice): 4337724
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Entry
4337724 CDS
T01015
Symbol
OsJ_17019, P0519E07.4
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
KO
K20827
RNA polymerase II-associated protein 2 [EC:
3.1.3.16
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
osa01009
]
4337724 (OsJ_17019)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4337724 (OsJ_17019)
Enzymes [BR:
osa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
4337724 (OsJ_17019)
Protein phosphatases and associated proteins [BR:
osa01009
]
HAD phosphatases
Fcp/Scp phosphatases
4337724 (OsJ_17019)
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
4337724 (OsJ_17019)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP2_Rtr1
Motif
Other DBs
NCBI-GeneID:
4337724
NCBI-ProteinID:
NP_001407079
LinkDB
All DBs
Position
5:complement(join(2012621..2012725,2012823..2012978,2013487..2013750,2013841..2014055,2014141..2014950,2016036..2016666))
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AA seq
726 aa
AA seq
DB search
MGPTTATDTGARMKPTTVASAVHRVQMALYDGAAASREPLLRAAASLLSGPDYADVVTER
SIADACGYPACPNPLPSEDARGKAAPRFRISLREHRVYDLEEARKFCSERCLVASAAFGA
SLPPDRPFGVSPDRLDALVALFEGGGGGGDDGGLALGFGASGDGKEVEEGRKVEIMEKEA
AGTGEVTLQEWIGPSDAIEGYVPRRDRVVGGPKKEAKQNDACSAEQSSNINVDSRNASSG
ESGMVLTENTKAKKKEATKTPLKMFKQDEDNDMLSSCISDSIVKQLEDVVLEEKKDKKKN
KAAKGTSRVGKSKPAKRPVGRDGHEVDFTSTIIMGDRGSEMMDHGALGQYNFSSSILANE
QPSSSQYAAIDSVQAYTEELDELFSNAVNIAKDETSDDSGRCTLRSSLKAVGSKNAGHSV
KWADENGSVLETSRAFVSHSSKSQESMDSSVRRESAEACAAALIEAAEAISSGTSEVEDA
VSKAGIIILPDMVNQQQYNNDYDNDKDAGENEIFEIDRGVVKWPKKTVLLDTDMFDVDDS
WHDTPPEGFSLTLSSFATMWAALFGWVSRSSLAYVYGLDESSMEDLLIAGGRECPQKRVL
NDGHSSEIRRALDTCVCNALPVLVSNLRMQIPVSKLEITLGYLLDTMSFVDALPSLRSRQ
WQLMVLVLLDALSLHRLPALAPIMSDSKLLQKLLNSAQVSREEYDSMIDLLLPFGRSTQS
QASLPS
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgggccccaccacggccaccgacaccggcgcgaggatgaagcccacgaccgtcgcgtcg
gcggtgcaccgcgtccagatggcgctctacgacggcgccgcggcgtcgagggagccgctg
ctccgcgcggcggcctcgctgctctcggggccggactacgccgacgtcgtcacggagcgc
tccatcgccgacgcctgcgggtacccggcgtgccccaacccgctcccctcggaggacgcc
cgcggcaaggcggcgccgcggttccgcatctcgctccgggagcaccgcgtgtacgacctc
gaggaggcccgcaagttctgctccgagcgctgcctcgtcgcctccgccgccttcggggcg
tcgctcccgcccgaccgccccttcggcgtctcgcccgaccggctcgacgccctcgtcgcg
ctcttcgagggcggtggtggtggtggtgatgacggtgggttggcgctagggtttggggcg
agcggcgatgggaaggaggtggaagaggggaggaaggtggagatcatggagaaggaggcg
gctgggacgggggaggtgacgctgcaggagtggattgggccgtcggacgccatcgagggc
tatgtgcctcgccgtgatcgcgtcgttggagggccaaaaaaagaggctaaacagaacgat
gcttgtagtgctgagcagtccagtaatattaatgtggattctaggaatgcttcttctggt
gaatccggcatggttcttactgagaatacaaaagcaaagaaaaaggaagcaaccaaaacc
ccattgaagatgttcaagcaggatgaagataatgatatgttgtcgtcttgcatatcggat
tccattgtgaagcagctggaggatgtagttctcgaagagaaaaaggataagaagaaaaat
aaagcagctaaaggaacatcgagggtaggtaagagtaagcctgcaaaaagaccagttggg
cgtgatggacatgaagtggactttacaagtacaattattatgggtgatcgtggttcagaa
atgatggatcatggtgctctgggtcaatataatttctcaagttctatattagcaaatgag
cagccttcatcatctcaatatgcagcgatagattcagtgcaagcttacactgaagaacta
gatgaattatttagtaatgcagttaacattgcaaaagacgagacaagtgatgatagtggt
agatgtacactaagatcttcattgaaggctgttggatccaagaatgcagggcattctgtg
aaatgggcagacgagaatggaagtgtgttagagacaagcagagcatttgtaagtcactcc
agtaaatctcaagaaagcatggacagttcagtaaggcgtgaatctgcagaagcttgtgca
gctgcgcttattgaagcagcagaagctatttcatctggcacatcggaagtagaagatgca
gtttcaaaggcaggaatcatcatactgccggacatggttaaccagcaacagtacaataat
gattatgacaatgacaaagatgcaggggaaaatgaaatatttgaaattgataggggtgtt
gtgaagtggccgaagaagactgtgcttctagacacagatatgtttgatgtcgatgattct
tggcatgatacaccaccagaaggctttagtctaactctgtcctccttcgcaacgatgtgg
gctgcattatttggatgggtatcccggtcctcattggcctatgtgtatgggcttgatgaa
agttctatggaagatttgttgattgcaggtggaagagaatgtcctcagaagagagtttta
aatgatggccactcatctgaaattagaagagctttggatacttgtgtgtgtaatgccctg
ccagttcttgtatcaaacttgaggatgcaaattccagtctcaaagttggagattactctg
ggatacttgttggacacgatgtcatttgttgatgcactgccttctctgagatcaaggcag
tggcaattgatggttctcgtgctgcttgatgcgctctcactccatcggcttcctgctctt
gctccaataatgtcagattcgaagcttttgcagaagcttttgaactcggctcaggttagc
cgagaggagtatgactccatgattgatctcctcctcccttttggaagatccacgcagagc
caggcatccctgccaagttaa
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