Oryza sativa japonica (Japanese rice): 4337782
Help
Entry
4337782 CDS
T01015
Name
(RefSeq) LEC14B protein isoform X1
KO
K11801
DDB1- and CUL4-associated factor 11
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
osa04121
]
4337782
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
4337782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
PROPPIN
Beta-prop_TEP1_C
Beta-prop_EIPR1
NBCH_WD40
WDR54
WDR90_beta-prop_4th
RMC1_N
PQQ
WD40_like
Beta-prop_NUP159_NUP214
Cytochrom_D1
Beta-prop_HPS5
Beta-prop_WDR19_1st
eIF2A
Beta-prop_DCAF12
WD40_2
Motif
Other DBs
NCBI-GeneID:
4337782
NCBI-ProteinID:
XP_015640462
UniProt:
B9FH64
LinkDB
All DBs
Position
5:join(2551517..2551858,2551992..2552111,2552570..2552647,2552784..2552960,2553145..2553222,2553522..2553694,2553822..2553977,2554401..2554461,2554659..2554877)
Genome browser
AA seq
467 aa
AA seq
DB search
MRGRRRRAREADPVPEPFTIDDEVSHLTRIRSEPSQKTLGAFYAGRKRGISTFGLLSGRE
SGRSGAGGFSRADCAYAARKHLPTKGPWCVDDMTSEAYVSQFSSDGSLLVAGFRGSRIRI
YDADNGWKVHKDISCRSLQWTVSDIALSPDQQLLAYSSLSPTVHIVNVQSSAKESQANVT
EIHDGLEFSNDDDDEYSFGIFSVKFSKDGQEIVVGNSDRSINVYDLRANKVSVRIRAHAA
DVNAVTFADESGNLLYSGSDDNLCKVWDRRCLAREKPAGVLTGHLDGITFIDSRGDGRYF
ISNCKDQTIKLWDVRKMSASIKGRQPRFFDWDYRWMSFPLEARHCKHPNDQSLATYRGHS
VLRTLIRCYFSPVYSTGQRYIYTGSSDEYVYIYDVVTGDIVEKLSWHGSIIRDCTWHPYN
LTIVSSSWDGYLARWEASGDEDDLSVLTENEQRTSPYRQSYTRHLLL
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgcgagggagacggcggagagctcgggaagctgaccctgtgcctgagccattcaccatt
gacgatgaggtctcccatctcaccaggattagatcagagccaagtcaaaagactcttggt
gctttttacgccggtcgcaagaggggcatctcaacgttcgggctgttgtccgggagggag
tctggccgttcgggtgctggtggattctctagagccgattgcgcttacgctgcccggaaa
cacctgccaacaaaaggaccatggtgtgtggatgacatgactagtgaggcgtatgtgtcg
cagttctctagtgatggttcactgcttgttgctgggtttcggggaagccgcatcagaatt
tacgatgccgataacgggtggaaggttcataaggatataagctgccgaagcctgcagtgg
acggtttcagatattgctctatcacctgatcagcaattacttgcatattccagtttgtcg
cctactgttcacatagtgaatgtgcagagttctgcaaaggaatcacaagctaatgttact
gaaattcatgatggtttggagttttctaatgatgacgatgatgaatattcttttggaata
ttttctgtgaagttttcaaaggatggtcaagaaattgttgttggcaatagtgatagatct
ataaatgtttatgatcttagagcaaataaagtgtctgttcgcatccgtgctcatgcggct
gatgtcaatgcagtcaccttcgctgatgaaagtggtaatctattgtactctggaagtgat
gataatctctgtaaggtgtgggataggcggtgccttgctagagaaaaaccagcaggtgtt
ttgacaggacatttagatgggattacatttattgatagccgtggtgatggacgttatttc
atatccaactgcaaggaccaaacgatcaaactttgggatgtgaggaaaatgtccgcttct
attaaaggccgtcaaccgagattttttgactgggattacagatggatgtcattcccgttg
gaagctcgacactgtaagcatccaaacgatcagtctctggccacatacagaggccattca
gttctgcggacacttatccgttgctacttctccccagtgtacagcacgggtcagagatac
atatacacaggatccagcgacgagtatgtctacatctatgacgtggtaactggggatatc
gtcgagaagctttcgtggcatggatcgatcatcagggactgtacctggcatccttacaac
ctgacaatcgtcagctcttcctgggacggctacctggcaaggtgggaggcatcaggggac
gaggacgacctttctgtgctcacggaaaacgaacagaggacgagtccttaccgtcagtcg
tacacacggcaccttctgctgtag
DBGET
integrated database retrieval system
