Oryza sativa japonica (Japanese rice) (RefSeq): 4337788
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Entry
4337788 CDS
T01015
Name
(RefSeq) DNA repair helicase UVH6
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03022
Basal transcription factors
osa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4337788
09124 Replication and repair
03420 Nucleotide excision repair
4337788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4337788
03400 DNA repair and recombination proteins [BR:
osa03400
]
4337788
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
4337788
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
4337788
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
4337788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
Nitrate_red_del
AAA_11
Motif
Other DBs
NCBI-GeneID:
4337788
NCBI-ProteinID:
XP_015637543
UniProt:
B9FME3
Q6AUI3
LinkDB
All DBs
Position
5:complement(2584801..2590127)
Genome browser
AA seq
758 aa
AA seq
DB search
MKFDLEGLTVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTSALISLITSYS
LASPSRPLRLIYCTRTVHEMEKTLAELRLLFAHLPAAASRSLLALGLSSRKNLCVHPQAS
AAAARDSVDTACRRLTASWVRDRAASDPDSTPLCDFFESFDRAAAAGDLASYMPPGVYTL
ADLRALGRDRGICPYFLARQMVKYANVVVYSYQYLIDPKVASIVSREMQKECVVVFDEAH
NIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLAQRGN
LPISDAWLANPALPEDILKEAVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEMPVAF
VASIHSQAGIDQKMLRFCYDRLHSLMLTLEITDTDEFMHIQTICDFATLIGTYTRGFSII
IEPYDERMPDIRDPVIQLSCHDASLAIQPVFERFQTVVITSGTLSPIDLYPRLLNFNPVI
SRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVC
FFVSYSYMDGIVNSWNEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAIFF
SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDAL
RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIA
REFLRRMAQPYDKTGSGGNKTLLTEEDLQNMAQDAMEM
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcgacctggagggcctgacggtgcacttcccgtacgcggcgatctacccggag
cagcacgcgtacatgggcgagctgaagcgcgccctcgacgcgcgcggccacgcgctgctc
gagatgccgacgggcaccggcaagacgtcggcgctcatctccctcatcacctcctactcc
ctcgccagcccgtcccgcccgctccgcctcatctactgcacccgcaccgtccacgagatg
gagaagaccctcgccgagctccgcctcctcttcgcccacctccccgccgccgcctcccgc
tccctcctcgccctcggcctctcctcccgcaagaacctctgcgtccacccccaggcctcc
gccgccgccgcccgcgactccgtcgacaccgcctgccgccgcctcaccgcgtcctgggtg
cgcgacagggccgcctccgacccggactccaccccgctctgcgacttcttcgagtccttc
gaccgcgccgccgccgccggtgacctcgcctcctacatgccccccggcgtctacaccctc
gccgacctccgcgccctcggccgcgaccgcgggatctgcccctacttcctcgcgaggcag
atggtcaagtacgccaatgtcgtggtctacagctaccagtacctgattgatcccaaggtg
gccagcattgtgtccagggagatgcagaaggagtgcgtcgtcgtcttcgacgaggcgcac
aacatcgataatgtctgcattgaggctctcagtgtcagcatccgcaagcagacgctcgaa
ggtgccgagcgaaacttgcggcgcatctcgcaagagatcgataggttcaaggccactgat
gccaataggcttcgtgctgaatacaacaggctggttgatggattggcacagaggggaaac
ctgccaatatcggatgcttggctcgcgaacccggccttgcctgaggacattctgaaggag
gctgtaccaggaaacatcaggagggctgagcattttcttgctgttttgcggaggcttgtc
aggttcctagatggacgcctggaaacagagaatgttgagaatgaaatgcctgttgccttt
gttgcttcaatccattcccaggctggaattgaccagaaaatgttaaggttttgttatgat
cggctacactctctaatgcttaccttggagataaccgatacagatgagttcatgcacatc
cagacaatttgtgactttgccacattgattggaacttatacacggggcttttctataata
atagaaccctatgatgagagaatgcctgatatccgtgatcctgtgattcagctcagttgc
catgatgcatcgcttgcaatacagcctgtttttgagcgttttcaaacagtagtcataact
tctggtactctcagcccaatagacctctaccctcgccttttgaactttaatcctgttata
agcaggagcttcacaatgtctttaacaagggattgcatatgtcccatggtcttgacaaga
ggaagtgaccagctacctgtcagtacaaagtttgatatgcgtagcgatcctggcgttgta
aggaattatggtcggctcttgctggagatggcttctgctgtgccagatggcatagtttgt
ttttttgtcagttactcttatatggatggcattgtcaacagctggaatgagatgggtatt
ttgcaggacatcatgcagcataagttggtattcattgaaacaccagatgttgttgagaca
acattggctcttgataattacagaaaggcatgtgattgtggaagaggtgctatattcttt
tccgttgccaggggcaaagtagccgaaggtattgattttgatcgacactatggcagactt
gtgatcatgtttggtgttcctttccagtacacactcagcaggatattacttgctaggttg
gagtacctaagagaaacttttcaaataaaggagggtgacttcctgaccttcgatgctttg
aggcaagctgcgcaatgtgttggccgtgtgatccgttctaaagcagattatggaatgatg
atatttgctgacaagagatacagtcgccatgataaacggtctaaactgcctgggtggata
ctgtcacacttacatgatgcgcacctaaatctgagcactgatatggctttgcatatagct
cgtgagttcctacggaggatggcgcagccttacgataagacggggagcggcggcaacaag
actctcttaaccgaagaggatttgcagaatatggcgcaggacgccatggagatgtga
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integrated database retrieval system
