KEGG   Oryza sativa japonica (Japanese rice): 4337825
Entry
4337825           CDS       T01015                                 
Name
(RefSeq) probable chromatin-remodeling complex ATPase chain
  KO
K11654  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    4337825
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4337825
   03036 Chromosome and associated proteins [BR:osa03036]
    4337825
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase I system
   Other transcription-related factors
    NoRC (nucleolar remodeling complex)
     4337825
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Chromatin remodeling factors
   CHRAC complex
    4337825
   RSF complex
    4337825
   WICH complex
    4337825
   B-WICH complex
    4337825
   NORC complex
    4337825
   BRF complex
    4337825
   NuRF complex (fruit fly)
    4337825
SSDB
Motif
Pfam: SNF2-rel_dom SLIDE Helicase_C ResIII HAND HDA2-3 Myb_DNA-binding DEAD DBINO CHDII_SANT-like AAA_14
Other DBs
NCBI-GeneID: 4337825
NCBI-ProteinID: NP_001407098
LinkDB
Position
5:join(2888967..2889455,2890031..2890162,2890308..2890411,2891008..2891120,2893237..2893334,2893464..2893643,2893721..2893942,2894098..2894232,2894317..2894599,2894686..2894759,2894992..2895212,2895291..2895378,2895479..2895572,2895655..2895843,2896197..2896228,2896370..2896449,2896546..2896635,2896739..2896808,2897068..2897113,2897198..2897256,2897416..2897581,2897757..2897935,2898014..2898220,2898357..2898461,2898564..2898584)
AA seq 1158 aa
MGKPGKYGDGDDDDSEEEQLSPSSSAGEEEEEEVEEEEGEEQQEEQGEEEEGFSGDEEEQ
EVEGEADGEQVEEEEEEESSVGEEEAEAEGEEEEEEVEEEQGAGEEEEEEVDEEEIEAVT
TGAGGDDDDEEVGDDGGAEEESQSTEDDEVAAGKDGGGEDGDKLEDATGNAEIGKRERAK
LREMQKLKKHKIQEILDAQNKAIDADMNNKGKGRLKYLLQQTEIFAHFAKGNQSTEKKSR
GRGRHASKMTEEEEDEEYLKEEEDALDGAGGTRLVSQPSCIKGKMRDYQLAGLNWLIRLY
ENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMKEIQRFCPVL
RAIKFLGNPEERNHIRENLLVPGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKN
ENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDDWFQISGEN
DQHEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSEMQKQYYRALLQKDLEVV
NAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLIENAGKMVLLDKLLPKLKE
RDSRVLIFSQMTRLLDILEDYLMYKGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLL
STRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKV
IERAYKKLALDALVIQQGRLAEQKAVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIA
KGEEATAQLDAKMKKFTEDAIKFKMDDTAELYDFDDDKDENKLDFKKLVTDNWIEPTSRR
ERKRNYSESDYFKQALRQGAPAKPREPRIPRMPHLHDFQFFNTQRLNELYEKEVKYLVQA
NQKKDTVGEGDDEDQLEPLTVEEQEEKEQLLEEGFSTWTRRDFNTFIRACEKYGRNDIKN
ISSEMEGKTEEEVQRYAKVFQERYKELNDYDRVIKNIEKGEARIYRKDEIMKAIGKKLDR
YKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRMSPLFRFDWFVK
SRTTQELARRCETLIRLVEKENQEYDERERLARKDKKNMSPAKRSSSRSLDTPPQSSSKR
RRQSYTEANAGSGRRRRG
NT seq 3477 nt   +upstreamnt  +downstreamnt
atggggaagccggggaagtatggcgacggcgacgacgacgactcggaggaggagcagctc
tccccttcgtcttccgccggcgaggaggaggaggaggaggtagaagaggaagagggggag
gagcagcaggaggagcagggggaggaggaggaggggtttagcggggacgaggaggagcag
gaggtggagggtgaggcggatggggagcaagtggaggaggaggaagaggaggagtctagt
gtcggggaggaggaagcagaggcggagggtgaggaggaggaagaggaggtggaggaggag
cagggggctggggaagaggaagaggaggaggttgatgaggaggagatcgaggcggtcacc
accggcgccggaggggacgacgacgacgaagaagtgggcgatgacgggggcgcggaggag
gagtcgcagtccacggaggacgacgaggtcgccgccgggaaggatggcggcggtgaagat
ggcgacaagttggaagatgctactggaaacgcagagatcgggaagcgggagcgagcaaag
ctcagggagatgcaaaagctgaagaagcacaaaatccaggaaatactggatgcccaaaat
aaggccattgatgctgacatgaacaacaaggggaagggacgtctgaagtatctcctgcag
caaactgaaatatttgctcattttgcgaaaggaaaccaatcgacagagaagaaatcacgt
ggaaggggacgtcatgcatcaaagatgacagaggaggaagaagatgaggagtatctcaag
gaggaggaagatgcccttgatggtgcaggagggacccgtctggtttcacaaccatcatgc
ataaaaggaaagatgagagattaccaactagctggacttaattggctcatacgcttgtat
gagaatggcatcaatggaatattggctgatgagatgggtcttggaaaaacccttcaaact
atatcactgcttggatatttgcatgagtttagaggaataaccggtccccacatggttgtt
gcaccaaagtccactcttgggaactggatgaaggaaatacaacggttttgtcctgttctg
cgtgctatcaagttcttaggaaaccccgaagaaaggaaccatatccgggaaaatttgtta
gtcccagggaagtttgacgtctgtgttactagttttgaaatggcaattaaagaaaaaact
gcattgaagcgtttcagctggcgttatattattattgatgaagcccaccggataaaaaat
gaaaattcccttctctctaagactatgaggatttacaatactaattatcgtctcctcatt
acgggcactccactacagaataatcttcatgaactttggtctcttctcaacttcttgttg
cctgaaatatttagctctgctgagacttttgatgattggttccaaatctcaggggaaaat
gatcaacatgaagttgttcagcagcttcataaggttcttcgtccatttctgcttcggagg
cttaaatctgatgttgagaaaggtttaccaccaaaaaaggaaactatacttaaagttgga
atgtctgagatgcaaaaacaatattatcgtgctctgcttcagaaagatctggaggttgtc
aatgccggtggtgaacgcaaacgccttcttaacatagccatgcaattgcggaagtgctgc
aaccatccatatttattccaaggtgctgagcctggtccaccctataccactggagaccat
ctaattgagaatgcaggaaaaatggttctgttagataaattacttcccaagctaaaggaa
cgtgattccagagtacttattttctcacagatgactaggctcttggacatcttggaagat
tatctgatgtacaaggggtatcaatattgccgaattgatgggaatactggtggtgaagat
cgtgatgcttcgattgaagctttcaacaagccagggagtgaaaaatttgttttcttgctt
tcgactagggcaggtggtcttgggataaatcttgctactgctgatgttgttattctttat
gacagtgactggaatcctcaagtggatctgcaagcgcaagatcgtgcacatagaattggt
caaaagaaagaagttcaagtttttcgtttctgcactgagtatacaattgaggaaaaggtg
attgagagagcttataagaagcttgccctggatgctttggtcatacaacagggtcgattg
gcagagcagaaagctgtcaataaggatgagctattgcagatggtcagatttggtgctgaa
atggtattcagctccaaggatagcacaataacagatgaagatattgaccgcatcatcgct
aagggagaagaagcaacagcacaacttgatgcaaaaatgaagaagttcacagaagatgct
attaagttcaaaatggatgacactgctgaactgtatgattttgatgatgataaggatgaa
aacaaacttgattttaagaagttggtcactgacaactggatagagccaaccagcagaaga
gaaaggaagcgaaactactctgagtctgattatttcaagcaagcacttcgccaaggtgca
ccagcaaaacctagggaaccgagaattcctcgaatgccacacttgcatgatttccagttc
ttcaacactcagagactcaatgaattatatgagaaggaagtcaaataccttgtgcaagca
aatcagaaaaaggatacggttggtgagggtgatgacgaagatcaactggaaccgttgact
gtggaggagcaagaagagaaagagcagctattggaagagggcttttcgacatggacaagg
agggacttcaatacattcatccgtgcttgtgagaagtacggtcgtaatgacataaagaac
atatcctctgaaatggaggggaaaacagaagaggaggtgcagcggtacgctaaagttttc
caggaaagatacaaggaattaaatgattatgaccgagttattaagaacattgagaaagga
gaagcaaggatataccggaaggatgagattatgaaagctattgggaaaaagctagaccgc
tataagaacccttggttagagttgaaaattcagtatggccagaataaagggaagttatac
aacgaagaatgtgatcgttttatgttatgcatggtgcacaaactcggatacggaaactgg
gatgaactgaaagcagcctttcgcatgtcgcccttgttccgatttgattggtttgtgaag
tctagaacaacccaagagctagctaggaggtgcgagaccctcattcgtctagtggagaag
gagaaccaagaatatgatgagcgtgagagattggccaggaaagataagaagaatatgtcg
ccagcaaagcgttcttcatcaaggtcgctcgatacccctccacaaagctcttcgaagagg
aggcgccagtcctacactgaagccaatgcaggctcgggaaggagaaggcgagggtga

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