Oryza sativa japonica (Japanese rice): 4337827
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Entry
4337827 CDS
T01015
Symbol
OsJ_17141, P0001A07.4
Name
(RefSeq) transport inhibitor response 1-like protein Os05g0150500
KO
K14485
transport inhibitor response 1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
4337827 (OsJ_17141)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
osa04121
]
4337827 (OsJ_17141)
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
4337827 (OsJ_17141)
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SSDB
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GFIT
Motif
Pfam:
Transp_inhibit
LRR_At5g56370
LRR_4
LRR_6
F-box_5
F-box-like
F-box
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
4337827
NCBI-ProteinID:
NP_001407105
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Position
5:complement(join(2907599..2908369,2909161..2909653,2912890..2913389))
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AA seq
587 aa
AA seq
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MGRGGSRAACAAAAPPWHSLPDEVWEHAFSFLPAAADRGAAAGACSSWLRAERRSRRRLA
VANCYAAAPRDAVERFPSVRAAEVKGKPHFADFGLVPPAWGAAAAPWIAAAADGWPLLEE
LSFKRMVVTDECLEMIAASFRNFQVLRLVSCDGFSTAGLAAIAAGCRHLRELDLQENEIE
DCSIHWLSLFPESFTSLVTLNFSCLEGEVNITVLERLVTRCHNLKTLKLNNAIPLDKLAS
LLHKAPQLVELGTGKFSADYHSDLFAKLEAAFGGCKSLRRLSGAWDAVPDYLPAFYCVCE
GLTSLNLSYATVRGPELIKFISRCRNLQQLWVMDLIEDHGLAVVASSCNKLQELRVFPSD
PFGAGFLTERGLVDVSASCPMLESVLYFCRRMTNEALITIAKNRPNFTCFRLCILEPHTP
DYITREPLDAGFSAIVESCRGLRRLSISGLLTDLVFKSIGAHADRLEMLSIAFAGNSDLG
LHYILSGCKSLKKLEIRDCPFGDKPLLANAAKLETMRSLWMSSCLLTLGACRQLARKMPR
LSVEIMNDPGRSCPLDSLPDETPVEKLYVYRTIAGPRSDTPACVQIV
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcggcggctcgcgcgcggcgtgcgccgccgcggcgccgccgtggcactcgctc
ccggacgaggtctgggagcacgccttctccttcctccccgccgccgcggacaggggcgcc
gcggcgggggcgtgcagctcgtggctccgcgccgagcgccggtcgcgccgccgcctcgcc
gtcgccaactgctacgccgccgcgccgcgggacgccgtcgagcggttcccgtccgtgcgc
gccgccgaggtcaagggcaagccccacttcgccgacttcggcctcgtcccccccgcctgg
ggcgccgccgcggcgccgtggatcgccgccgccgccgacgggtggccgctgctcgaggag
ctcagcttcaagcgcatggtcgtcaccgacgagtgcctcgagatgatcgccgcgtccttc
aggaacttccaggtgctccgcctcgtctcctgcgacggcttcagcaccgcgggcctcgcc
gccattgctgccggttgcagacacctaagagaacttgacctgcaagagaacgagattgag
gattgttctattcattggctcagcctcttcccggaatcgttcacttctctagtaactcta
aacttttcatgcttagagggggaggtcaatatcactgtacttgaacggttagtgaccaga
tgtcacaacctgaagactcttaagctcaacaatgctatcccccttgacaagcttgctagc
ctccttcataaggctcctcagctagttgaactcggaactggcaaattctctgctgattac
cattccgatctgtttgcaaagctggaggcggcgtttggaggttgtaaaagcttgagaagg
ctttctggggcttgggatgctgttccagattatctgccagcattctattgtgtatgtgaa
ggcctcacatcacttaatctgagttatgctactgtgcgaggtcctgagctcatcaaattc
attagtagatgcagaaatttgcaacaattatgggtgatggacctcattgaggatcatggt
ttagctgttgtggcatcatcttgcaataaacttcaagagttgcgggtcttcccttctgac
ccttttggtgcaggattcttgactgaaagaggtcttgttgatgtctctgcaagttgtcca
atgttggagtcagtgctctacttctgcagacggatgacaaatgaggcacttattaccatt
gcaaagaaccgtcccaacttcacttgcttccgcctatgcatccttgagccacacactcca
gactacatcacacgggagcctcttgatgcaggtttcagcgccattgtggagtcatgcagg
ggccttaggcgtctctctatctcaggccttctcacagatcttgtgtttaaatccattggg
gcacatgctgatcgtcttgagatgctttcaatcgccttcgctgggaacagcgacttgggc
ctgcattacatcctctcaggctgcaagagcctgaagaaactggagatcagggactgccca
tttggtgataagccattgctggcgaacgcagcaaagctggagacaatgcgatccctttgg
atgtcgtcgtgcttgttgaccctgggcgcatgccgacagcttgcacgcaagatgccccgc
cttagtgtggagatcatgaacgatcctggaaggtcatgccccttggattcgcttccggat
gaaacacctgttgagaaactgtacgtctaccggacgatcgcaggtccaaggtccgacaca
ccagcctgcgtccagattgtgtag
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