Oryza sativa japonica (Japanese rice): 4337831
Help
Entry
4337831 CDS
T01015
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03020
RNA polymerase
osa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
4337831
09124 Replication and repair
03420 Nucleotide excision repair
4337831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4337831
03400 DNA repair and recombination proteins [BR:
osa03400
]
4337831
Enzymes [BR:
osa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
4337831
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
4337831
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
4337831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF7069
CCDC-167
PspA_IM30
Motif
Other DBs
NCBI-GeneID:
4337831
NCBI-ProteinID:
XP_015638336
UniProt:
Q0DKN9
LinkDB
All DBs
Position
5:complement(join(2949257..2949311,2951102..2951173,2951281..2954441,2954543..2954801,2954888..2955174,2955251..2955586,2955690..2955831,2955905..2956125,2956207..2956368,2956445..2956603,2956688..2956987,2957662..2957925,2958730..2958816))
Genome browser
AA seq
1834 aa
AA seq
DB search
MDAARFPYSPAEVAKVEAVQFGVLSPDEIRQMSVVHIEHAETMEKGKPKPGGLSDPRMGT
IDRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDI
KFKQALKIRNPKNKLKRIYDACKNRKICAGGDNLDVQEQQGTDDPVKKRGGCGAQQPNIT
VDGMKMVAEYKAPKKKNDDQEQLPEPVDRKQILSAERVLNVLKHISDEDCLLLGLNPKFA
RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD
TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKQI
NLIRFSGWHSEAETRFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMENINETISKAKNDVKKLIKQFRDNQ
LEAEAGRTTMESFENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQM
TACVGQQNVEGKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQ
KLDSLKMKKAEFDNVFRYELDDENWKPNYLSTQHAEDLKTISEIRNVFEAEVQKLEADRF
QLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVV
PGDDDISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHL
KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDED
IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI
TNDEAQKGEIQDEYGEDDVFLKKIESNMLTEMALRGIPGINKVFIKEGNVNKFEDNDGFK
TEKGWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD
GSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD
PLRGVSENIMLGQLAPIGTGGCDLYLNDQMLKQAIELQLPSYVEGLDFGMMTSACSPISG
TPYHQGMMSPSYLLSPDIRASPTAADAQFSPYVGGMAFSPVSSPGNYTPSSGGGYSPSPP
VCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSP
SSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTS
PSYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
SAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTYS
PTSPSYSQPSPSYSPTSRVEEEAHEEAEEEEPKR
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atggatgctgcgaggttcccgtactcgccggccgaggtggccaaggtggaggcggtgcag
ttcggcgtcctcagccccgacgagatcagacaaatgtcggtggtgcatatagagcatgca
gagactatggaaaaggggaagcccaagcctggtggcttgagtgaccctcggatggggaca
attgaccggaagatcaagtgtgagacatgcatggctgggatggcagagtgcccaggccac
tttggccaccttgagcttgctaagccaatgttccacatcggcttcatcaagactgtactc
tccataatgcgctgcgtctgcttcaattgctccaagatccttgcagatgaggatgatatc
aagttcaagcaggctcttaaaatcaggaatccaaaaaataaactaaaaagaatatatgat
gcttgcaagaacagaaagatctgtgcaggcggtgacaatcttgatgttcaggagcaacaa
ggtactgatgatccagtgaagaaaaggggtggctgtggtgctcagcagccgaatatcact
gttgacggtatgaagatggttgcagagtataaagcaccaaagaagaaaaacgatgaccaa
gagcaactccctgaacctgtggaccggaagcaaatcctctctgctgagagggtccttaat
gttcttaaacatataagtgacgaggactgtcttctattgggtctgaaccccaaatttgcc
cgtcctgattggatgattttgcaagtccttccgattcctccaccccctgtgagaccatct
gtaatgatggatacttcttccagaagtgaggatgatttgactcatcaattagcaatgata
attcgacacaatgagaacttgaggaggcaagagagaaatggagccccagctcacataata
acagagtttgctcagttattgcaattccacattgcaacatactttgacaatgaacttcct
ggccagccaagggccacacagcgatctggaaggcctattaaatcaatttgcagcagactg
aaagcaaaggaaggccgcattagaggaaacttgatggggaagcgtgttgatttctcagct
cgtactgtcatcacaccagacccgaatattaacattgatgaattgggagtgccatggagt
attgctttgaacctgacatacccagaaactgttactccatataacatcgagaggttgaaa
gaacttgtagaatatgggccccaccctccccctgggaagacaggtgcaaaatacattatc
agggaagacggtcagaggcttgatcttcgttatgtgaagaaaagtagtgatcagcatctg
gagctgggttacaaggtggaaaggcacctcaatgatggggattttgttcttttcaatcgg
caacccagtcttcacaaaatgtctatcatggggcatcgcattaaaatcatgccctattca
actttccgcttaaacttgtccgtcacttcgccgtacaatgcagattttgatggggatgaa
atgaatatgcatgttcctcagtcatttgagaccagagctgaagttctagagttgatgatg
gttccaaaatgtattgtgtctcctcaatcgaacaggcctgttatgggtattgtccaggac
acgcttcttgggtgtcgcaaaattactaaaagagatactcttattgaaaaggatgtattt
atgaacatcttaatgtggtgggaagattttgatggaaaggtccctgcccccgccattttg
aaaccaaggcctatttggactgggaaacaagttttcaacttaattattcccaagcaaatc
aatttgattagattttctggctggcattctgaagctgaaacaagatttattactcctggt
gatactatggtccggatagagaagggagagcttctatctggtacactttgcaaaaagaca
cttggaacatcaactggaagtcttattcatgttatttgggaagaggttggtccagatgct
gctcgcaagttcttaggtcatacacagtggctagtcaactactggcttctgcaaaatggt
ttcagtattggaattggggatacaattgcagatgcagccaccatggagaatattaatgag
acaatctcaaaagctaaaaatgatgtgaagaaacttattaagcaatttcgtgataaccaa
ttggaagctgaggcaggacgcaccacgatggaatcatttgaaaatagagtaaatgaggtt
cttaacaaggctcgtgatgttgctggaagtagtgccgagaagagtttgtctgaaagtaac
aatctgaaggctatggccaccgcaggctcaaaaggaactttcatcaatatttcacagatg
actgcttgtgtcggacagcagaatgttgagggcaagcggatcccatttggcttcaccaat
cgaacattgccccacttcacgaaaaatgactatggtcctgaaagtcgtgggtttgtggag
aactcttaccttcgaggcctgacaccacaagaatttttctttcatgctatgggtggtaga
gaaggtctgattgatactgctgtgaagacctcggaaactggatatatccagcgacgactt
gtgaaggctatggaagatatcatggtgaagtatgatggtactgttagaaattctttggga
gatgtcattcagttcttatatggagaagatggcatggatgctatttggattgagtcacag
aagttggactccttgaagatgaaaaaggctgagtttgataatgtatttcgttatgaactg
gatgatgagaactggaagccaaactacttgtcgactcaacatgctgaggatttgaagacc
atcagtgagattagaaatgtgtttgaggcagaggttcagaagctagaagctgaccggttc
cagcttggcactgagattgctacaactggtgataatacatggcctatgcctgtcaatctc
aagcggcttatctggaatgctcagaagacattcaagattgatctgagaaggccttctgac
atgcacccaatggaaattgtggatgcaatagataagctgcaagaaagacttaaggttgtc
cctggtgacgatgatatcagtattgaggctcagaagaatgcaactttgttcttcaatatc
ctgcttcgaagcacatttgctagcaagagggtcttgaaggagtacaggcttacaaaggaa
gcttttgaatgggttattggtgagattgaatcgagattccttcaatctttagtggctcca
ggtgaaatgatcggatgtgtagctgcacagtccatcggagaaccagcaactcagatgacc
ctgaatactttccattatgctggtgtcagtgccaagaacgttacccttggtgttcccagg
ctgagagaaatcattaatgttgctaagaatataaaaactccatcattgtcagttcaccta
aagcctgaggtgaacaagaagaaggaattggcgaagaatgtccaatgtgccttagagtac
actactctgcggagtgtgactcatgctactgagatatggtatgatcctgatcctctggga
accattattgaagaagatgctgaatttgtccagtcctactatgaaatgcctgatgaggac
attgaccctgataaaatttctccatggctgctgcgtattgagctgaatcgtgagatgatg
gttgataagaaattgagcatggctgatattgcagagaagatcaatcatgaattcgatgat
gacttgtcatgtatatttaatgatgataatgcagataaactgatccttcgtgtccggatc
acaaatgatgaagctcaaaagggagaaatacaggatgaatatggtgaggatgatgtcttc
ctcaagaagattgagagtaacatgttgacagagatggcccttcgtggaattccaggtatt
aacaaagtgtttatcaaagaggggaacgtcaataaatttgaggacaatgatggcttcaaa
acagagaaggggtggatgcttgatacagaaggtgttaatctcttggctgtcatgtgccat
gaagatgttgatgctactaggacaacaagtaaccatttgattgaagtaattgaggttctt
ggaatcgaggctgtccgccgagctctcttggatgagctgagggttgtcatatcttttgat
ggatcttatgtcaactacaggcatctggccgttctttgtgatacaatgacatacagggga
catctgatggctattacaaggcatggtatcaaccgtaatgacacagggcctcttatgaga
tgttcttttgaagagactgtggacatcttgcttgatgctgctgtatatgctgaatctgac
cccctgagaggtgtcagcgagaacattatgcttggccagcttgctcctataggtacagga
ggctgtgatctgtatctgaacgatcagatgctgaagcaggccatcgagcttcaactccca
agctatgttgaaggcctggactttggcatgatgacatcagcatgctcgcccatctctggg
acaccatatcatcaagggatgatgtcgccaagttacctgctgagtccagacatcagggct
tcccccactgcagcagatgctcagttctcgccgtatgttggaggaatggctttctcaccc
gtatcttcaccaggcaactacactccttcgtcagggggtggttacagtccatctcctccc
gtatgtactccagggccaggaagcttcacctcttcatcaccatataatcctgtctctcct
ttttactcgcctgccagtccattatcatgcccacttaccagtccgtcatatgtgcctacc
agtctaccacactcaccaacatctccaatatacagcgctacatctcctatctacagccct
tcatctcctatctacagccctacatcactaagttacagtcccacatcaccagtttatagt
ccgacttctcctgtatataacccaacttcttctgcatacagccccacatcaccatcttat
aaccctacatcgccgtcttacagttacagccccacatcaccatcttatagccccacatcg
ccgtcttacagttacagccccacatcaccatcttatagccccacatcgccgtcttacaat
tacagccccacatcaccgtcatatagcccaacatcgccgtcttacagccccacatcacca
tcatacagcccaacatcgccgtcttacagtccgacgtcaccctcatatagtccgacatcg
tctgcatacagccctacttcgcctgcatacagcccaacatctcctggctacagcccaaca
tctccaagctacagcccatcttcgccaagctacaatccttcttcggtcaagtacacgcct
tcacatgcatactctccaagcagcccaaattactacagctcaacatcgccgacatactca
cctacctcaccatcatactcgcaaccaagcccgtcatacagcccaacaagtcgagtggaa
gaagaagcgcatgaggaggctgaagaggaagagccaaaaagatga
DBGET
integrated database retrieval system
