Oryza sativa japonica (Japanese rice): 4337900
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Entry
4337900 CDS
T01015
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4337900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4337900
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
4337900
Complex C
U5 SnRNP specific factors
4337900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
4337900
NCBI-ProteinID:
XP_015639300
LinkDB
All DBs
Position
5:complement(join(3723473..3723664,3723867..3724109,3724203..3724481,3724572..3724769,3724858..3725493,3725596..3725850,3725962..3726068,3726153..3729949,3730060..3730549,3731287..3731677,3731865..3731957,3732062..3732185,3733115..3733401))
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AA seq
2363 aa
AA seq
DB search
MWSGGPPPPPPPPMGAAPPPPGTGAPPPPLPAAAAAAGPPGGGKPLTPAELEAQLVEKAR
KWHQLNSKRYGDKRKFGFVEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFV
PHAVYKLLENMPMPWEQVRHVKILYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREK
RDRRHFKRMRFPPFDDEEPPLDYADNLLDVEPLEAIQLELDEEEDSAVHEWFYDHKPLVK
TKLINGPSYRKWHLSLPIMATLYRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGG
PKFEPLYRDMEKGDEDWNEFNDINKLIIRQPLRTEYRIAFPHLYNNRPRKVRLGVYHTPM
IMYIKTDDPDLPAFYYDPLINPITSTSKVDRRERRTIEEDEDEDFCLPDGVEPLLKGTEL
YTDTTAAGISLLFAPKPFNMRSGRTRRAEDIPLVSEWYKEHCPPAYPVKVRVSYQKLLKC
YVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNL
NYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQ
LADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPM
WRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDV
LDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNV
AHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTT
VHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDN
PHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKR
HLFPNWVKPADSEPPPLLVYKWCQGINNLQDVWDTSDGQCVVMLQTKFEKFFEKIDLTLL
NRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLL
GLTRASEIAGPPTMPNEFLTYADTKVETRHPIRLYSRYVDKVHIMFRFTHEEARDLIQRY
LTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENS
FVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLRV
DDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCE
NKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTH
FRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSW
DRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRT
DVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNR
RFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMD
LCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWQMSKPSLVSESKDVF
DQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLH
SAFGNWFPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIF
SNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKR
LGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLP
FQACLKIEKFGDLILKATEPQMVLYNIYDDWLKSISSFTAFSRIVLILRALHVNNEKAKM
LLKPDKTIVTEPHHIWPTLTDEQWLKVECALRDLILSDYAKKNNVNTSALTQSEIRDIIL
GAEIAPPSQQRQQIAEIEKQSRETTQLTAVTTRTTNVHGDELIITTTSPYEQQAFASKTD
WRVRAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICIADLRTQIAGFLYGLS
PQDNPQVKEIRCIAIPPQHGTHQMVTLPANLPEHEFLNDLEPLGWMHTQPNEAPQLSPQD
LTSHAKILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRSNKDSGSNPHGYL
PTHYEKVQMLLSDRFLGFYMVPDNTPWNFNFMGVKHDPLMKYNMKLGTPRDFYHEDHRPT
HFLEFSNIDEGEVAEGDREDTFT
NT seq
7092 nt
NT seq
+upstream
nt +downstream
nt
atgtggagcggcgggccgccgccgcctccccctccgccgatgggggccgcgccgcctccc
ccgggcacgggcgctccgcctccgccgctgccggcggcggcggcggccgcgggtcccccc
ggcggcggcaagccgctgacgccggcggagctcgaggcgcagctggtggagaaggcgagg
aagtggcaccagctcaactcgaagcggtacggcgacaagcgcaagttcgggttcgtcgag
gcgcagaaggaggacatgccccccgagcacgtccgcaaaatcatcagggaccatggtgac
atgtcttcaaagaagtacaggcacgataagcgtgtatatcttggagcactcaaatttgtg
cctcatgctgtttacaagctactggaaaatatgccaatgccctgggaacaggtccggcat
gtaaagattctgtaccatatcactggtgcaataacctttgtaaatgagatcccatgggta
gttgagcccatttaccttgcacagtggggcacgatgtggatcatgatgaggagggagaag
agagataggcgacatttcaagagaatgcgctttcctccatttgatgatgaggaacctcca
ttagactatgctgataatttgctggatgttgaaccactggaggctatacagttggaattg
gatgaggaggaagattcagctgtgcatgaatggttttatgatcataagccgcttgttaag
acaaagcttataaatggccccagctacaggaaatggcatctatcgcttcccataatggca
acactctatcgtcttgctggccaacttttgtcagatttgattgatcgaaattatttctat
ttgtttgatatggagtctttctttaccgccaaagcactcaacatgtgtatcccaggaggt
ccgaagtttgagccactgtaccgtgatatggagaagggggatgaggactggaatgagttt
aatgacatcaacaaactcatcatccgccaaccacttaggacagagtatagaattgctttt
ccacacttgtacaataacaggccaaggaaagtgaggcttggggtatatcatactccaatg
ataatgtatatcaagacagatgatccagacttgcctgcattttactatgatcctttgata
aatcctataacttcgacaagcaaggttgatcgtcgggagaggaggacaattgaagaggat
gaagatgaggacttctgtctcccggatggtgtggagcccctcttgaaaggaacagaactt
tacactgatacaacagcagctggcatttcattactctttgctccaaagccttttaatatg
aggtctggtagaacacgtcgtgctgaagatatccctcttgtatctgaatggtacaaggag
cactgcccaccagcttatccagtgaaggtgcgtgtcagctatcagaagctactgaagtgt
tatgtgctcaatgagctacatcataggcctcccaaggcgcagaagaagaagcatctgttc
cgttcactccaagcgacaaagttttttcaaacaacggagcttgactgggcagaagcaggt
ttgcaagtttgcaaacagggttacaatatgttgaacttgttgatccacagaaagaacctt
aactaccttcacttagactacaacttcaatttgaaacctgtgaagactctcacaacaaag
gaaaggaaaaaatctcggtttggaaatgcatttcatttatgccgtgagatattacgactt
actaagttagtagttgatgcaaacatccagttccgcttgggaaatgttgatgctttccag
ttagcagatggcttgcaatatatattctctcatgttggccagctgactggtatgtaccgc
tacaagtatcgtctgatgcggcaaatcaggatgtgcaaagatctgaagcacttgatatac
taccggttcaatactggtcctgtaggaaaaggacctggctgtggattctgggctccaatg
tggagggtgtggctgttttttctgcggggtattgtaccactgcttgaaagatggttaggt
aatctactggccaggcagtttgagggtcgtcattcaaaaggagttgctaaaactgtaacc
aagcaacgtgttgagtctcactttgatcttgaacttcgagctgctgttatgcatgatgtc
cttgatgctatgcctgagggtatcaagcaaaacaaggcacggactatactacagcatctt
agtgaggcatggcggtgctggaaggcaaatatcccatggaaggtcccaggcctaccggtt
cctattgagaacatgatacttcgttatgtaaagtccaaggctgattggtggaccaatgtt
gctcactacaatcgtgagcgtatcaggcgtggtgctacagtcgacaagactgtgtgccgc
aagaatcttggaagattaacccgtttgtggctgaaggcagaacaggagaggcagcacaac
tacctgaaagatgggccatatgtgacacctgaagaggcagttgctatctacacaacaaca
gttcattggctagaatcaaggaagttctcacctattccttttcctcctctttcttacaag
catgacaccaaacttcttatactagctctggaaaggctaaaggaatcttacagcgtggca
gtaaggttaaatcaactgcagcgggaggaacttggattgattgagcaagcatatgataat
cctcatgaggcactgtcaaggataaagcggcatcttcttactcagcgtgcttttaaagaa
gttggcattgagtttatggacctgtacagctaccttattccggtatatgaaattgagcct
cttgagaaaatcaccgatgcttaccttgaccagtacttgtggtatgagggggacaagcga
cacctattcccgaactgggtcaagcctgctgattcagaaccacctcctctgcttgtttac
aaatggtgccaaggtataaataatctacaggatgtatgggacactagtgacgggcagtgt
gttgtgatgctgcagacaaaatttgaaaagttcttcgaaaaaattgatctgacactgttg
aacaggcttctgcggttggtcttggaccacaatattgctgattatgtcactgcaaagaac
aatgttgtattatcttacaaggatatgagtcatactaattcttatggtctcattcggggt
ctacagtttgcatcatttgttgtgcaatactatgggcttgtgctggatctccttctgctc
ggtttaacacgtgcaagcgagattgcggggccacctacgatgcctaatgagttccttaca
tatgctgataccaaagttgagacaaggcatcctattcggctgtattctcggtatgtcgac
aaggtgcatataatgttccgctttactcacgaggaagcacgcgatttaattcagcgttat
ttgactgagcatcctgatcctaataatgagaacatggtcggttacaacaacaagaaatgt
tggcctagagacgcaagaatgaggctcatgaagcatgacgtaaatcttggaagaagtgtt
ttttgggacatgaagaaccgcctcccaaggagcatcacaacgttagagtgggagaacagc
tttgtctctgtttacagcaaggacaaccctaatctgctttttagcatgtgcgggtttgag
gttcgtatactaccaaagatacggatgactcaagaagcgtttagtaacaccaaagatgga
gtctggaatttgcagaatgaacagacaaaagaaaggacagctattgcctttctaagagtt
gatgatgaacatatgaaagtgtttgagaaccgtgtcaggcaaatccttatgtcctcaggg
tcgactacattcactaagattgttaacaagtggaataccgctctcattggtcttatgaca
tatttccgggaagcaactgtccatacccaggagctcttggatttacttgtcaaatgtgaa
aacaagatccagactcgcataaagattggcctgaactcaaaaatgcctagcaggtttccg
cctgttatcttctatacacccaaggaaattggaggtctgggaatgttatcgatgggtcac
attctgataccacagagtgacctcaggtacagtaaacagacagatgttggtgtgacacat
tttcggagtggtatgagccatgaagaggaccagcttatccctaacttatatcgctacatt
cagccctgggagagtgagtttattgattcacagcgggtttgggctgagtatgctttgaag
aggcaggaagcacaatcacagaacagacggttgacacttgaggatcttgaagattcatgg
gatagaggtattcctcgtatcaacactcttttccaaaaagaccgtcatactttggcatat
gataagggatggagagtgagaacagatttcaagcagtaccaagtgctcaaacaaaaccca
ttctggtggacacatcagagacatgatggaaagctatggaacctaaacaactataggact
gatgtcatccaagctcttggtggtgttgagggtattttggaacacaccttgtttaaagga
acatatttccctacttgggagggtctgttttgggagaaagcgtcaggttttgaggagtcc
atgaaatacaagaagctgactaatgcacaacgttctggtctcaatcagatacccaaccga
agatttaccctgtggtggtcaccaaccatcaatcgtgcaaatgtgtatgttggtttccag
gttcagctagatcttaccgggattttcatgcatgggaaaattccaaccctgaagatttct
ttaatccagatcttccgtgcgcatctgtggcagaagatccatgaaagtgttgttatggat
ctttgccaagttttggatcaagagctggatgcactggagattgagacagtgcagaaagag
acaatacatccgagaaagagctacaagatgaacagctcctgtgcagatatcctccttttt
gcggcacataggtggcagatgtccaaaccaagcttagtctctgagtcaaaggatgtcttt
gatcagaaagctagtaacaagtattggattgatgtgcaactacgctggggagactatgat
tcacatgacattgagcgttatacaagggccaagttcatggactacactactgacaatatg
tctatctatccatctccaactggggtgatgattggaattgatctagcatataatttgcac
tctgcttttggcaattggttccctgggtcaaagcccctccttcagcaagcaatgaacaag
ataatgaagtcaaatcctgctctgtacgtgctgagggagagaataaggaagggtctacaa
ctgtattcttcggaacccactgagccatatttgtcttcacagaactatggagagatattc
agcaatcagatcatatggtttgtggatgacacaaatgtctatcgagttaccattcacaaa
acattcgagggtaacttgaccactaaaccaatcaatggtgctatttttatttttaatcca
agaactggtcaattatttctgaaggtcatccacacaagtgtatgggctggacaaaagcgt
cttggacagctggccaagtggaaaacagctgaagaggttgctgcattagttcggtcgctt
cctgtagaagagcagccaaagcaaatcattgtgacaaggaagggcatgttggatcctttg
gaggtccatctgcttgacttccctaacatcgttatcaagggcagtgagttgcagctgcca
ttccaagcttgtttgaagattgagaagtttggtgatcttattctcaaggctacagaaccc
cagatggttctgtacaacatatatgatgattggttgaagagtatctcatcattcactgct
ttctctcggattgtgcttatattgcgtgcacttcatgtcaataatgagaaggcaaagatg
ctgctcaagcctgacaagaccattgttacggaaccacatcatatttggccaaccttgact
gatgagcaatggctgaaggttgaatgtgcactcagggaccttattctgtctgattatgcg
aagaaaaacaatgttaatacttctgcattgacacaatctgaaattcgtgatatcatactt
ggtgctgaaatagctccaccatcacagcagaggcaacagatagctgaaattgagaaacag
tctagagagacgactcagctgactgcagttactacaaggacaaccaatgtgcatggagat
gagctcatcatcacgacgaccagtccgtatgagcaacaagcatttgcatcaaagactgat
tggcgtgtcagggccatctctgccacgaacttgtatcttcgtgttaatcacatttatgtt
aattcagatgatataaaggagactggctacacttacattatgccgaagaatatattaaag
aagttcatatgcatagcagatttaaggacacagattgcaggttttctatatgggctgagt
ccacaggataacccccaagttaaagagatcagatgcatagctattcctccacagcacgga
actcatcagatggtgacactgcctgcaaaccttcctgagcacgagttccttaatgatttg
gagccactgggctggatgcatacccagcctaatgaagctccccagctatcaccacaggat
ttgacatcgcacgccaagatcttggagaacaacaagcaatgggatggtgagaagtgcatc
attttgacatgcagctttaccccaggatcttgttcattgaccgcgtacaagttgacgcca
agtggttacgagtggggccgtagcaacaaggacagtggaagcaacccacatggatatctc
ccgactcactacgagaaggtccagatgcttctcagtgacagattcctaggattctacatg
gtgccggataacaccccttggaacttcaacttcatgggagtgaagcacgacccgctgatg
aagtacaacatgaagcttggcacgcccagggacttctatcacgaggaccatcggccgaca
catttcctcgagttcagcaacatcgacgagggcgaggtcgcggaaggtgatagggaggac
accttcacgtag
DBGET
integrated database retrieval system
