Oryza sativa japonica (Japanese rice): 4337972
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Entry
4337972 CDS
T01015
Name
(RefSeq) pre-mRNA splicing factor SR-like 1 isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4337972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4337972
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
4337972
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
4337972
NCBI-ProteinID:
XP_015640508
UniProt:
B7F7E9
A0A8J8XW10
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Position
5:join(4724864..4725151,4725554..4725634,4725911..4725982,4726550..4727413)
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AA seq
434 aa
AA seq
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MEIQTSGKPIDLLMEKVLCMNIMSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR
GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYVADPKILWTWYEPYLK
DDEEFSPGSNGRMTTMGVYVRDLILGQYYFDSLLPRVPLPVIRQVTSNLEKMKLPTKLSG
ITGESNRHGSEDTARRPPSVKASLSVSFGQRAPHRASTRESSPVRRTVTHDGHRKSSSPS
RRSGSREVPDRDRSSRDRSSRDYDRSSHDRDRDHSSRDYDRPSHDRDRDRDRSSRDYDRS
SRDRDHDRDIRDYHRRDRDSRDRDYRSRHSSERQDDRRDRDREGSRHRRSSSRHRSRSRS
RSRSRSRSRSRSRNEERSSPFGNAGKEKTAAISSNLAKLKDLYGDVTEKKDDGEAPRRDS
CAEEVIRLGGPRWR
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggagatacaaacttcagggaagcccattgatctgctgatggagaaggttctttgtatg
aacattatgtcttctgattacttcaaggagctctacaggctgaagacctatcatgaggtc
attgatgaaatatacaatcaagttgatcatgtggagccttggatgactggcaattgcagg
ggcccctccactgcattctgtctcctctacaagttcttcaccatgaagcttactgtcaaa
cagatgcatggtttgttgaagcatcctgattccccatacattagagctatagggttcttg
tatcttcgatatgttgcagatccgaagatcttgtggacgtggtatgagccctacttgaag
gatgatgaggaattctcccctggatctaatggtcgcatgacaaccatgggtgtttatgtg
cgtgatcttatacttggacagtactacttcgatagtcttcttccaagagttcctcttcca
gtaattcgtcaagtgacatccaatcttgagaagatgaagttgcccactaagctttctggg
attactggagagtctaatcgtcatggatcagaagatactgcccgccggcctccttccgtg
aaggcttctctgtcagtttcctttggacagcgtgctccgcatcgtgcatccacacgggag
tcatctccagttcggaggacagtcacccatgatggccatcgtaaatcttcctcaccatct
cgccgtagcggaagccgcgaggttcctgatcgtgatcgatcaagccgtgaccgttctagt
cgtgactatgaccgttcaagccatgaccgtgatcgtgaccattccagtcgtgactatgac
cgtccaagccatgaccgtgaccgtgatcgtgaccgttccagtcgtgactatgaccgttca
agtcgtgaccgggatcatgatagagacatcagagactatcatcggcgtgatcgtgacagc
agggaccgtgactataggtctaggcattcatccgaaagacaagatgaccgaagggaccgt
gaccgtgagggtagcaggcacagacggtccagctctcggcacagaagcagaagccgcagc
cgcagccgcagccgcagcagaagcaggagccgcagcagaaatgaggagagatccagtcct
tttggcaatgcaggcaaagaaaagactgctgccatctcgagcaacctagcaaagctcaag
gacttgtatggtgatgtaactgagaagaaggacgacggtgaagcccctcgccgtgattcg
tgcgcggaggaggttatcaggttgggtggcccgagatggagatag
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