Oryza sativa japonica (Japanese rice): 4338309
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Entry
4338309 CDS
T01015
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa00040
Pentose and glucuronate interconversions
osa01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
4338309
Enzymes [BR:
osa01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
4338309
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Gyro_capsid
Motif
Other DBs
NCBI-GeneID:
4338309
NCBI-ProteinID:
XP_015638870
UniProt:
Q0DJF3
B9FK32
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All DBs
Position
5:complement(join(13000218..13000436,13003948..13004077,13004606..13005378))
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AA seq
373 aa
AA seq
DB search
MAAIFIFIWLFASVLSISSASSPLLINGSTADAAPDCGTGNPIDDCWRCDPGWADNRQRL
ADCAVGFGRRAVGGKGGRVYVVNDTGDDAARPAPGTLRYGLVQDEPLWIVFAGDMTISPA
HELVVSSRKTVDGRGARVVVGDGGACFAVRGASDVVIHGLTIRRCRPAPKLEAGMSDGDG
VHNSSDVWVDHCTVEACADGLIDVVVGSTRVTLSNNLLRNHDKAILLGHNDDYTDDKAMQ
VTVAFNRFGPGLVQRMPRCRFGLFHVINNDYIAWQKYAIGGSASPTIISHGNRFYADMAK
EVTKRDDDVPESVWHHWNWVSDGDLMLNGAFFRASGEARTDNLKAPSFARSAPSVPSMTS
SAGALSCKEGSHC
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggctgccatcttcatattcatatggttgttcgcctccgttttatccatttcatcagct
tcttctcctttgctgatcaatggtagtactgctgatgctgcaccggactgcggtaccggc
aacccgatcgacgactgctggcgttgcgaccccggctgggccgacaaccggcagcggctc
gccgactgcgccgtcgggttcggccgccgcgccgtcggcgggaaggggggcagggtgtat
gtcgtgaacgacaccggcgacgacgcagcccgcccggcacccggcacgctccggtacggc
ctcgtccaggacgagcccctctggatcgtgttcgccggcgacatgaccatcagccccgcc
cacgagctggtcgttagctcgcgcaagaccgtggacggcaggggcgcccgcgtggtggtt
ggcgacggcggcgcgtgcttcgcggtgaggggcgcgagcgacgtcgtcatccacgggctt
accatacgccggtgcaggccggcacccaagctggaggccggcatgtcggacggcgacggc
gtccacaactcgagcgacgtgtgggtcgaccactgcacggtggaggcctgcgccgacggg
ctgatcgacgtggtcgtaggttccacccgcgtgacgctttccaacaacctcctgcgcaac
catgacaaggcaattctcctcggccacaacgacgactacaccgacgacaaggccatgcag
gtcaccgttgccttcaatcgctttggaccaggcctcgtccaaagaatgccaaggtgtcgg
tttggtcttttccacgtcatcaacaacgattacatagcatggcaaaagtacgccattggg
ggcagtgcttcaccgaccataattagccacggcaacagattctatgctgatatggccaaa
gaggtgacgaagcgcgatgacgatgtgccggagagcgtgtggcaccactggaactgggta
tccgacggcgacctgatgctcaacggcgcgttcttcagggcatcaggcgaagcaaggaca
gataatttgaaagcccctagctttgcaaggtctgccccctccgtgccgtcgatgacttcc
tcggcaggcgccctctcctgcaaggagggctcgcactgctga
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