Oryza sativa japonica (Japanese rice): 4338600
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Entry
4338600 CDS
T01015
Name
(RefSeq) RNA-binding protein BRN1
KO
K13207
CUG-BP- and ETR3-like factor
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4338600
Spliceosome [BR:
osa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
4338600
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_5
Motif
Other DBs
NCBI-GeneID:
4338600
NCBI-ProteinID:
XP_015637429
UniProt:
Q0DIP2
A0A0P0WLU4
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All DBs
Position
5:join(18095907..18096168,18097600..18097682,18098713..18098764,18098876..18099001,18099113..18099195,18099949..18100131,18100553..18100889,18100978..18101121,18101197..18101327)
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AA seq
466 aa
AA seq
DB search
MAEDGGGDRDQQNQQQQQEEAAAPAAAAAGVGGGEEQGNGRGEESVKLFVGQVPKQMTED
ELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEADKAVNAYHNKRTLPGASSPL
QVKYADGELERLEHKLFIGMLPKNVTDAEMTDLFSQYGNIKDLQILRGSQQTSKAGCAFL
KYETKEQALAAIEALNGKHKIEGSSVPLVVKWADTEKERQARKAQKAQFHPSNMSNPNAM
QQSSLFGAMQMGYVPQYNGYGYQPQGTYGLMQYPLSPMQNQAAFPNMVQSVNQGSSIRGV
NSELSPNSAPRSFNSMQLGSPYSPVPSMQYPGSYPGNAINSRPFVNSHNSMKVPNANASS
PTSSSTSSNPGPQIEGPPGANLFIYHIPQEFGDQDLAGAFQGFGRVLSAKVFVDKATGLS
KCFGFISYDSPASAQTAISMMNGYQLGGKKLKVQLKRDNSKHSKTY
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggacggcggcggcgacagggaccagcagaaccagcagcagcagcaggaggag
gcggcggcaccggcagccgcggcggcgggggtggggggaggggaggagcaggggaacggg
aggggggaggagagcgtgaagctgttcgtggggcaggtgccgaagcagatgacggaggac
gagctcgccgccatgttcgccgccgtcgccgtcgtcgacgaggtcaccctcatccgcgac
aaggccaccaaggcgtcccgaggctgctgctttttgatctgcccatcaagggaggaggct
gacaaggcggtgaatgcatatcacaacaagcgcacccttccaggggcttcaagtccattg
caagtgaaatatgctgatggagagttggaaagactggagcacaaacttttcattggaatg
cttccaaaaaatgtaacagatgctgaaatgactgatttattttcgcaatatgggaacatc
aaggatttgcaaattttgagaggttcacaacagacaagcaaagccggctgtgcctttttg
aagtatgaaacaaaagagcaagcgctggcagctatcgaagctctaaatgggaaacacaaa
atagagggttcaagtgtacctttggttgttaaatgggctgacactgagaaggaaagacaa
gctcgaaaagcacaaaaggctcaatttcacccatctaatatgtcaaatccaaatgcaatg
caacagtcttcattatttggagctatgcagatgggatatgtaccacagtataatggttat
ggctaccagccacaaggaacctatggactaatgcagtaccctttatctcctatgcaaaat
caagctgccttcccgaatatggttcagtctgttaatcaaggaagctctattcgtggagtc
aattctgaactttcacctaattctgctcctagatcgtttaactcaatgcagttaggcagt
ccttattcgcctgtgcctagtatgcagtatccgggatcatatcctggtaatgctatcaat
agtcgtccttttgtgaattctcacaattcaatgaaagttccaaatgcgaatgctagttct
cccacttcttcaagtactagcagcaaccccggtcctcagatagagggtcctcctggagcc
aatttatttatctaccacatccctcaagaatttggcgaccaagatcttgccggtgccttt
cagggttttggtagagtactgagtgctaaagtttttgtagacaaagcaactggtcttagt
aaatgcttcggttttataagctatgattctcctgcttctgcacagacagccattagtatg
atgaacggataccaattaggtggtaaaaaactgaaagtacaactcaagagagacaacagc
aagcacagtaaaacttattga
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