KEGG   Oryza sativa japonica (Japanese rice): 4338675
Entry
4338675           CDS       T01015                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4338675
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:osa03041]
    4338675
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     4338675
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    4338675
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    4338675
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N DEAD AAA_22 AAA_19 AAA_30 SRP54 nSTAND3 T2SSE AAA_7 NB-ARC
Other DBs
NCBI-GeneID: 4338675
NCBI-ProteinID: XP_015637331
UniProt: A0A0P0WLZ9 Q6I5X9
LinkDB
Position
5:complement(18973893..18977105)
AA seq 1070 aa
MAASDDGQLRTWVSDRLMALLGYSQGLVARLVVRLARECASAGDLAARLVDLAGFPPSPD
TAAFAEDVYGRVPRSCGGGGDDAGVSEYQRQMQEAAAMAKKQSTIKLLDDDGEIGVSASP
SSGGRKRFRRKAVGEDDDDAGRNARRRRSPDDEEEDGDAGEEEEMERDQIERAQLERNIR
ERDAASTRRLTDRKTTKREQGELARRSDAMDKNDTSGLRRLSRRAYLQRRKEKKVEEMRD
EIVDHEFLFPGVQLTAAEERDMRHKKQVYGLVHDRDDYYRMPDAYDAAANVDQEKRFSVA
RRRYEEPAEAARDGKTANALSEQEAWEEQQIRKSRLQFGSMDRGRRGDEYELLFDDGVEF
VRSTVMAGTAPADDDDTAAAAAADEYHAEAMDAKATLQDERKTLPVYKLKDDLLKAIDEH
KVLIVVGETGSGKTTQIPQYLHEVGYTAGGRKKVACTQPRRVAAMSVAARVAEEMGVKLG
HEVGYSIRFEDCTSEKTVIKYMTDGMLLREFLGEPDLGSYSVVVVDEAHERTLATDILFG
LVKDIARLRPDMKLLISSATLNADKFSDFFDAAPVFRIPGRRFEVGIHYTVAPEADYIDA
AVVTVLQLHVTEPPGGGDILLFLTGQEEIETVEEILRHRLRVLGGKVAELVICPIYANLP
AELQAKIFEPAPAGARKVVLATNIAETSLTIDGIKYVVDPGFCKVKSYNPRTGMESLLVA
PVSRASAEQRAGRSGRTGPGECFRLYTEYNFVSDLDDDAVPEIQRSNLASVVLALKALGI
NDLVGFDFMDPPPAESLLRALEELFALGALNSRGELTKTGRRMAEFPLDPMLSKAIVASE
RYGCSEEVITIAAMLSAGNAVFYRPRDKRVHADAARRAFHAGNAGDHVALLNVYNAWAES
GYSPQWCRESFVQHRTMRRARDVRDQLGALLERVEIAPCSSAGGGDLDAVRKAVTAGYFR
HAARLQRDGSYRAVKSRQTVFVHPSSGVAQAPPRWALYHELVLTTKEYMRQVTELKPEWL
VEIAPHYYERKDVDEPEPKKTAAATTPQEQTTAGSTPTKQTPNLNSFFDV
NT seq 3213 nt   +upstreamnt  +downstreamnt
atggcggcgagcgatgatggccagctcaggacgtgggtctccgaccgcctcatggcgctc
ctcggatactcccagggcctcgtggcgcggcttgtcgtccgcctcgcgcgggagtgcgcc
tccgcgggtgacctcgcggcgcggctcgtcgacctcgccgggttcccgccttcccccgac
accgccgcgttcgccgaggacgtgtacgggagggtgccccgcagttgcggcggcggcggc
gacgacgccggggtcagcgagtaccagaggcagatgcaggaggctgcggcgatggccaag
aagcagagcaccatcaagctgctcgacgacgacggcgagatcggcgtttccgcgtcgccc
tccagcggcggcaggaagcgtttcaggaggaaggccgtgggcgaagacgatgacgatgcc
ggacggaacgcgcgacggcggcgtagcccggacgacgaggaggaggacggcgacgccggc
gaggaagaagagatggagcgggatcagatcgagagggcgcagctcgagcggaacatcagg
gagcgcgacgcggcgagcacgaggaggctgacggatcggaagacgaccaagcgggagcag
ggcgagctcgcgcgccggtcggacgccatggacaagaacgacacctcggggctcaggagg
ctctcccggcgcgcgtacctgcagaggcggaaggagaagaaggtcgaggagatgcgcgac
gagatcgtcgaccacgagttcctcttccccggcgtccagctgacggccgccgaggagagg
gacatgaggcacaagaagcaagtctacggcctcgtgcacgatcgcgacgactactacaga
atgccggacgcctacgacgccgccgcgaacgtcgatcaggagaagaggttctcggtggcg
cggcggcggtacgaggagccagctgaggcggcgagggacggcaagacggcgaacgccttg
tccgagcaggaggcctgggaggagcagcagatacggaagtcgaggctgcagttcggatcc
atggatcgcggccggcgcggcgacgagtacgagctcctgttcgacgacggcgtcgagttc
gtcaggtcgacggtgatggcgggcaccgcgcctgcagacgacgacgacacggcggcggcg
gcggcggccgacgagtaccatgccgaggccatggatgccaaggccacgttgcaagacgag
aggaagactctcccggtgtacaagctcaaggacgacctgctcaaggccatcgacgagcac
aaggtcctgatcgtcgtcggcgagaccggctccggcaagacgacgcagataccgcagtac
ctccacgaggtcgggtacacggcgggggggaggaagaaggtggcgtgcacgcagccgcgg
cgcgtggcggcgatgagcgtggcggcgagggtggcggaggagatgggcgtcaagctcggg
cacgaggtcggctactccatccggttcgaggactgcacgtcggagaagacggtgatcaag
tacatgaccgacgggatgctcctccgcgagttcctcggcgagcccgacctgggcagctac
agcgtcgtcgtcgtcgacgaggcccacgagcggacgctcgccaccgacatcctcttcggc
ctcgtcaaggacatcgcccgcctccgccctgacatgaagctgctcatctccagcgcgacg
ctcaacgccgacaagttcagcgacttcttcgacgcggcgcccgtcttccggatccccggg
cggcggttcgaggtgggcatccactacaccgtggcgccggaggcggactacatcgacgcc
gccgtcgtgacggtgctgcagctgcacgtcacggagccccccggcggcggcgacatcctg
ctgttcctcacggggcaggaggagatcgagacggtggaggagatcctgaggcatcggctg
cgggtgctcggcggcaaggtggcggagctggtgatctgccccatctacgccaacctcccc
gccgagctgcaggccaagatcttcgagccggcgccggcgggcgcgcgcaaggtggtgctc
gccaccaacatcgccgagacgtcgctgaccatcgacgggatcaagtacgtggtcgacccg
gggttctgcaaggtgaagtcgtacaacccgcgcaccgggatggagtcgctgttggtggcg
ccggtgtcgagggcgtcggcggagcagcgcgccggccggtcggggcgcaccgggccgggc
gagtgcttccggctctacacggagtacaacttcgtcagcgacctcgacgacgacgcggtg
ccggagatccagcggagcaacctcgccagcgtcgtgctggcgctcaaggcgctcgggatc
aacgacctcgtcggcttcgacttcatggacccgccgccggcggagtcgctgctcagggcg
ctggaggagctcttcgccctcggcgcgctcaacagccgcggcgagctcaccaagaccggg
aggaggatggcggagttccccctggaccccatgctctccaaggccatcgtcgcgtcggag
aggtacgggtgctccgaggaggtgatcaccatcgcggccatgctgtccgccgggaacgcc
gtcttctaccgcccaagggacaagcgggtccacgccgacgccgcacggcgggcgttccac
gccggcaacgccggcgaccacgtcgcgctgctcaacgtgtacaacgcgtgggcggagtcc
ggctactcgccgcagtggtgccgcgagagcttcgtgcagcaccgcaccatgcggcgcgcg
cgggacgtgcgggaccagctgggggcgctgcttgagcgggtggagatcgcgccgtgctcc
tccgccggcggcggcgacctcgacgcggtcaggaaggcggtcacggcgggctacttccgc
cacgctgcgcggctgcagagggacgggtcgtaccgcgccgtgaagagccggcagacggtg
ttcgtccacccgagctccggggtggcgcaggcgccgccgcggtgggcgttgtaccacgag
ctggtgctcacgaccaaggagtacatgaggcaggtgacggagctcaagccggagtggctg
gtggagatcgcgccgcactactacgagcgcaaggacgtcgacgagcctgagcccaagaag
acggcggcggcgactacgccgcaagagcagacgacggccggctctacaccaacgaagcag
actccgaatctgaatagtttcttcgacgtgtaa

KEGG   Oryza sativa japonica (Japanese rice): 4345304
Entry
4345304           CDS       T01015                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X2
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4345304
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:osa03041]
    4345304
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     4345304
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    4345304
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    4345304
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N DEAD AAA_22 AAA_19 PWI AAA_30 nSTAND3 SRP54 AAA_16 TsaE Flavi_DEAD Sigma54_activ_2 ABC_tran
Other DBs
NCBI-GeneID: 4345304
NCBI-ProteinID: XP_015650435
LinkDB
Position
8:complement(join(15058156..15058202,15058300..15058372,15058459..15058521,15058627..15058727,15058802..15058925,15060374..15060436,15060532..15061572,15061657..15061723,15061818..15061933,15062084..15062170,15062379..15062468,15062758..15062826,15062996..15063058,15063139..15063196,15063804..15063861,15063979..15064046,15064138..15064217,15064714..15064777,15064951..15065022,15065147..15065206,15065974..15066028,15066117..15066150,15067475..15067561,15067666..15067752,15067841..15068038,15068139..15068269,15068369..15068468))
AA seq 1051 aa
MASDGQLRDWVSDKLMSLLGYSKSVVVQYVIRLAKECSSTGDLVGKLVEFGFTSSAETRS
FAADIYAKVPRKASGISNYQKQEREAAKLVKKQSTYKLLADEEDNDAETITSTSRQSSAS
TSSKSRKHFRRKAEDQDDGNDDDETKIKQDSGRNVKRRTEEVDDEDDGNDTDEEQERIRD
QQERAQLEKNMRERDAANTRKLMERQLSKEEQEEITRRSQAMDKNDTSDLRKFSRQAYLQ
KRRDKKIDEIRDEILDHEYIFQDVKLTEAEEKEFRYKKKIYDLVKEHVESADDVAEYKMP
EAYDMGDSVNQEKRFSVAMQRYKDPEARDKMNPFAEQEAWEEHQIGKSKLQFGSKDRKRS
SDDYQYVFEDGIDFVKSSVIEGTQHEEDSDQEDIDEKDMLKRELQDERKTLPIYKFRDEL
LKAVEEYQVIVIVGETGSGKTTQIPQYLHEAGYTAKGKVACTQPRRVAAMSVAARVSQEM
GVKLGHEVGYSIRFEDCTSEKTLIKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLST
DILFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEVHYTKAPEA
DYIDAAIVTVLQIHVTQPPGDILVFLTGQEEIETIDEILKHRTRGLGTKIAELLICPIYA
NLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFCKIKSYNPRTGMESL
LINPISKASANQRAGRSGRTGPGKCFRLYTSYNYMHDLEDNTVPEIQRTNLANVVLTLKS
LGIHDLVNFDFMDPPPSEALLKALEQLFALSALNSRGELTKTGRRMAEFPLDPMLSKMIV
ASEKYKCSDEVISIASMLSVGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLNVYNSW
KETDYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEISSNASDLDAIKKAITSGFF
HHSSRLQKNGSYRTVKNPQTVFIHPSSGLAQVLPRWVIYHELVLTTKEYMRQVTELKPDW
LVEIAPHYYQLKDVDDTGTKKLPKGQGRAAL
NT seq 3156 nt   +upstreamnt  +downstreamnt
atggcgagcgacgggcagctcagggactgggtctccgacaagctcatgtccctcctcggc
tactccaagagcgtcgtcgtgcagtacgtcatcaggctggcgaaggagtgctcttccacc
ggcgacctcgtggggaagctcgtcgaatttgggttcacgtcctccgcggagacccggagc
ttcgccgcggacatctacgccaaggttcccaggaaggccagcggtatcagcaattaccag
aaacaggaaagagaggcagcaaagcttgtgaagaaacagagcacttacaaactgttggct
gatgaggaggacaacgatgctgaaaccatcacatcgacgagtcgacagagctccgcgagt
acatcctctaagagtagaaagcattttaggaggaaagctgaagaccaggacgatgggaat
gatgatgatgaaacaaaaataaaacaggattctgggaggaatgtgaaaagacgaacagaa
gaggtggatgatgaagatgatggtaatgatactgatgaagagcaagaaaggataagagat
cagcaggaaagagctcagctagaaaaaaacatgagagaaagagatgcagccaacactcga
aagttgatggagcgacagttatctaaggaggaacaagaggagatcaccaggagatctcaa
gcaatggacaagaatgacacttcagatctgagaaaattttcaaggcaagcctacttacag
aagagaagggacaaaaaaatcgatgagatcagggatgaaattctagatcatgagtacatt
tttcaggatgtgaaactaactgaagcagaagaaaaggagttcagatacaaaaagaagatt
tatgatcttgtgaaggagcatgttgagagtgcagatgatgttgctgagtacaaaatgcct
gaagcttatgacatgggtgacagtgtcaatcaagaaaagagattctctgtagcaatgcag
cgttacaaagatcctgaggccagggataaaatgaatccttttgctgaacaagaagcatgg
gaagagcaccaaataggaaagtctaaactgcaatttggatcaaaagataggaagcggtct
tctgatgattatcagtatgtattcgaagatggcattgattttgttaaatcttcagtcata
gaaggaacgcagcatgaagaagactcagatcaagaggatatcgatgaaaaggatatgtta
aaaagggagctccaggatgagcgtaaaactcttccaatctataaattcagggatgaactg
ctcaaggctgttgaagagtatcaggttattgtcatagtaggagaaactggctctggtaaa
acaacacaaatacctcaatatcttcatgaagctggatatacagcaaaaggaaaggtggca
tgtacacaacctcgtcgagttgcagcaatgagtgttgcagcgagggtgtcccaagagatg
ggcgttaaactaggacatgaggttggctactctataaggtttgaggattgcacgtctgag
aaaacattgattaagtatatgactgatggcatgcttctgagggagtttcttggcgaacca
gatttggcaagctatagtgttgttatggttgatgaggctcatgagcgtacactgtctact
gatatcttatttggtttggtgaaggatatttcacggtttcgaccagatctaaagttgctc
atttcaagtgcaacccttgatgcagaaaaatttagtgactactttgattcagctcctatt
ttcaagatacctgggaggcgatatcctgttgaagttcattatacaaaagctccagaagca
gattatatagatgcagccattgtcactgttttgcagatacatgtgacgcaaccccctggt
gatattcttgtattccttacaggacaagaagaaattgaaacaattgatgaaatccttaaa
cacagaacaagaggcttaggcacaaagattgcagaactacttatctgtcctatatatgca
aatctgccaactgaacttcaagctaagatatttgagcccaccccagagggtgctcggaag
gttgttctggccactaatatagcagagacttcattgaccattgatggtataaagtatgtc
gttgatccaggcttttgtaagatcaagtcatacaatccccgaacagggatggaatctcta
cttatcaaccctatctcaaaggcatcagcaaaccagagggcaggaagatctggacgcact
ggaccaggaaaatgcttccgcctgtacacaagttataattacatgcatgaccttgaggat
aatactgttccagagattcaaagaaccaaccttgcaaatgttgtgcttacacttaagagt
cttggtattcatgacttggttaactttgattttatggatccacctccatcagaggctcta
ttaaaggccctggaacaactctttgctctcagtgcactcaacagtcgtggagaattgacc
aagactggcagaagaatggcagagtttccattggaccctatgttgtcaaagatgatagta
gcttcagagaaatataagtgctctgatgaggtcatctccattgcatccatgttgtcagtt
ggcaattctatattctatcgtccaaaggataaacaagtgcatgcagacaatgcaaggttg
aacttccacactggcaatgttggggatcatatagctctactcaatgtttacaactcatgg
aaagaaacagactattcaacacagtggtgctatgaaaactatatacaggtccgcagcatg
aagagagcaagagatattcgtgatcaactggagggacttctagaaagagttgagattgag
atttcttcaaatgccagcgatttggatgctattaaaaaggctataacatcaggtttcttc
catcattcttcacggttgcagaagaatggttcatatagaactgttaagaaccctcaaact
gtatttattcatcctagttctggattagcacaggtacttcctcgatgggtaatataccat
gaattagtccttacaacaaaagaatatatgcgtcaggtaacggaactgaagcccgactgg
ctggtagaaatagcgccacactattatcaactaaaagacgttgacgacactgggactaag
aagctgcctaagggccaaggacgagctgcattgtaa

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